Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq7 185 1e-41
seq4 176 5e-39
seq2 154 2e-32
seq5 111 2e-19
>seq7
Length=16482863
Score = 185 bits (204), Expect = 1e-41
Identities = 179/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || |||||| | || || || || ||||| | || |||||| ||
Sbjct 10792702 ATGCAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCG 10792643
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| |||| ||||||| |||||||| || ||||| || ||||| |||||||||
Sbjct 10792642 GACACGATTGAAAATGTGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAG 10792583
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | || ||||| || || || | || |||| ||| || || | ||||| |||
Sbjct 10792582 CAAAGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTTCGGACTACAAT 10792523
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 10792522 ATCCAAAAGGAATCCACTCTTCATCTAGTCTTACGTCTTCGCGGAGGACA 10792473
Score = 159 bits (176), Expect = 4e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || |||||||| || ||||| || |||||| | |
Sbjct 10794298 ATGCAAATCTTCGTTAAGACACTCACTGGCAAGACCATCACTCTGGAAGTTGAGCCCTCT 10794239
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | || || || || |||||||||||||| || |||||||| ||
Sbjct 10794238 GATACGATCGAGAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAA 10794179
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| |||||||| |||||||| || | || ||| | | || || ||
Sbjct 10794178 CAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTCCGATTACAAC 10794119
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||||||||| ||||| | || ||||||||
Sbjct 10794118 ATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCT 10794081
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| | || || ||||| || ||| | || || || |
Sbjct 10792930 ATGCAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTCA 10792871
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | || |||||||| ||||| || || || ||||||||||| |||
Sbjct 10792870 GACACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 10792811
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || |||||||| || |||||||| |||| || ||||| | |||||||||
Sbjct 10792810 CAGAGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTCGGACTATAAT 10792751
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || || ||| |||| |||||||| || || ||
Sbjct 10792750 ATTCAAAAAGAATCAACCCTACATTTAGTATTGCGTCTGCGAGGAGG 10792704
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || || || ||||| || || || || || || || | |
Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || | |||||||| ||||| ||||| ||||| || || ||||||||
Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 10793039
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | || |||||||| || ||||| || || | ||||| || | || || |||
Sbjct 10793038 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAAT 10792979
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||||||||| || | || |||||||| || |||||
Sbjct 10792978 ATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGAGGTGG 10792932
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || || || || |||||| | || || || |
Sbjct 10794070 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCC 10794011
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | |||||||| |||||||| ||||| || || || ||||||||
Sbjct 10794010 GACACGATTGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCAA 10793951
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | || ||||| || || ||||| || |||| |||||||| |||| || ||
Sbjct 10793950 CAAAGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAAC 10793891
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| ||||| | || |||||| | | |||||
Sbjct 10793890 ATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTTTGAGAGGTGG 10793844
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | || || ||||| || ||| | || || || ||
Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| |||||||||||||| ||||| ||||| ||||| |||
Sbjct 10793326 GACACTATCGAAAACGTTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793267
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || || || || || || ||||| |||| || || || | ||||| ||
Sbjct 10793266 CAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAAC 10793207
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || || || |||| ||||| || || |||||
Sbjct 10793206 ATTCAAAAAGAATCAACACTCCACTTAGTATTGCGGCTCCGAGGTGG 10793160
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| | || || || || || |||||||| || || |
Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| ||||||| |||||||||||||| ||||| ||||| ||||| |||
Sbjct 10793554 GACACAATCGAAAACGTGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793495
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | ||||| || || || || | ||||||| ||| || || | ||||| ||
Sbjct 10793494 CAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAAC 10793435
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || || || | || |||||||| || |||||
Sbjct 10793434 ATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCGTCTCCGTGGTGG 10793388
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | || || || || || || | ||||| ||| |
Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | || ||||| || ||||||||||| || || || |||||||||
Sbjct 10794466 GATACCATCGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAG 10794407
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || ||||| || |||||||| || | || || | | ||||| ||
Sbjct 10794406 CAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTACAAC 10794347
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
|||| |||||||| || || ||
Sbjct 10794346 ATCCAGAAGGAATCGACGCTCCA 10794324
>seq4
Length=12290766
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || || ||||||||||| || ||||||||||| ||| |
Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | |||| | || || ||||||||||||||||| || ||||| || || ||
Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | |||||||| ||||| || || ||||||| || || | | || || ||
Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| |||||| |||| |||||||| || |||||
Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939
>seq2
Length=15265516
Score = 154 bits (170), Expect = 2e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || || || || || || |||||||| || || |||||||| ||| |
Sbjct 12970124 AATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTC 12970183
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| || | ||| |||| ||||| |||||||| || ||||| ||||| || || ||
Sbjct 12970184 AGATACTATCGAGAATGTGAAAGCTAAGATTCAGGATAAAGAGGGGATTCCCCCGGATCA 12970243
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| ||||| || || || || || || |||||||||| |||||||| | || || ||
Sbjct 12970244 GCAACGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCCGATTACAA 12970303
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617
| |||| ||||||||||| ||||| ||||| ||
Sbjct 12970304 TATCCAGAAGGAATCCACCCTTCACCTAGTTTT 12970336
>seq5
Length=15459558
Score = 111 bits (122), Expect = 2e-19
Identities = 170/242 (70%), Gaps = 3/242 (1%)
Strand=Plus/Plus
Query 64615 GAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAA 64674
|||||||| |||||| || || ||||| | ||| ||||| || ||||| ||
Sbjct 2624513 GAGAAGGAGTTCTTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGCCGAC 2624572
Query 64675 TGGGCCATCCGGTGGATGAATCGTGGGT---CGTCGTTTGGTCAGCGTCTCGCAGCTTTT 64731
|||||| | | |||||| || | | || | ||||| | || ||| || |||
Sbjct 2624573 TGGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGCGTTT 2624632
Query 64732 GCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAG 64791
||| || ||||| |||||||| ||||| || ||| ||||||||||| ||||||
Sbjct 2624633 GCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAAAAAG 2624692
Query 64792 CGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTC 64851
||| || ||||||||||| | ||||| || || ||||| || |||||||||| ||
Sbjct 2624693 CGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTA 2624752
Query 64852 CA 64853
||
Sbjct 2624753 CA 2624754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570295557671840
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