Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1425 187 2e-42 >seq1425 Length=145493 Score = 187 bits (206), Expect = 2e-42 Identities = 351/516 (68%), Gaps = 0/516 (0%) Strand=Plus/Plus Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || || || || || ||||| || || || | || |||||||| || || || ||| Sbjct 66440 CCCGTAACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACC 66499 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 30064 || || ||||| ||||||| ||||||||| ||| ||| ||||| || ||| |||| Sbjct 66500 CCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACG 66559 Query 30065 TAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 30124 ||||||| || ||| || || || || ||||| | ||| ||||| || ||| Sbjct 66560 AAAAACTGCGCCAGACAGTGACATGGCGGCAGCGCCATTTTGTGCAAATCTTTCGGATTC 66619 Query 30125 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 30184 || || ||| ||| || | || || | || || |||| || || | | | Sbjct 66620 CACGCCGACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCGC 66679 Query 30185 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCG 30244 |||||| ||||||||| || |||||| || | || ||||||| || || Sbjct 66680 GCCAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCGCCCCA 66739 Query 30245 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30304 || |||| ||||||||||||||| | || |||||||| ||||| || | ||| ||| Sbjct 66740 AAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCTCCAAG 66799 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 ||| ||||| ||| | | | |||||||||||| || | || ||||| Sbjct 66800 CCCACTGAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTTTCTCC 66859 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30424 ||| || || || || || || ||| ||| |||||| ||||||||||| ||||| || Sbjct 66860 TTGAGGTCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGACAGCG 66919 Query 30425 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 ||| || |||| |||||| || || || |||||| Sbjct 66920 CGCCAGAAAACCCGCTTGGTGGTCAGCAGCGGAAAC 66955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300090127544