Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7 129 4e-25 seq4 102 5e-17 >seq7 Length=16482863 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||||||||||| ||||||||| ||||| || || || ||||| || Sbjct 10792931 GCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGA 10792990 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || ||||||| |||||||| || ||||| || || | |||||||| || || Sbjct 10792991 AAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGG 10793050 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||| |||||| ||| || | || ||| | |||||| || || | Sbjct 10793051 GATACCCTCTTTGTCT-TGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGA 10793109 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| ||| || ||||| || || | ||||| || ||||| |||||| Sbjct 10793110 CTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||||||||||| ||||| ||| || ||||| || || || || || Sbjct 10793615 GCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGA 10793674 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||||||||||||||| || || || || || | |||||||| || || Sbjct 10793675 AAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGG 10793734 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| |||| || | ||||| | ||| || || || | Sbjct 10793735 GATACCTTCCTTGTCTTGGATC-TTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGA 10793793 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || || || | ||||| || ||||| |||||| Sbjct 10793794 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || |||||||| ||||| || || ||| ||||| || ||||| ||||| || Sbjct 10794071 GCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 10794130 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || ||||||| ||||||||||| || || || ||||||||||| || || || Sbjct 10794131 CAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGG 10794190 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | ||| ||| | || || || | ||| | Sbjct 10794191 GATGCCCTCCTTGTCCTGGATC-TTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAA 10794249 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | || || || || || ||||| Sbjct 10794250 CTTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || ||||| || || ||||| || || ||||||||||| || || || Sbjct 10793159 GCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGA 10793218 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||||| | ||||| || ||||| ||||| || || || | ||| || || || || Sbjct 10793219 GAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGG 10793278 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CTC 34655 | ||||| ||||| ||| ||| | |||||| | || ||||| || | || Sbjct 10793279 AATCCCCTCTTTGTC-CTGAATTTTCGCCTTAACGTTTTCGATAGTGTC--CGATGGTTC 10793335 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||| || ||||| || || || || || || || || || |||||| Sbjct 10793336 TACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || ||| || || ||||| || || || ||||| || Sbjct 10793397 AGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGA 10793456 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | ||||| ||||| || || || | || || || || || | ||||| Sbjct 10793457 CCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCT 10793516 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | |||||||| || ||||| | || Sbjct 10793517 TTGTC-CTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGT 10793575 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||||| || || || || ||||| ||||| |||||| Sbjct 10793576 GATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615 >seq4 Length=12290766 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| || ||||| || ||| ||||| || ||||| ||||| || Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || |||||||| ||||| || ||||||||||| || || || Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | ||| || | || |||||| ||| || Sbjct 489059 ATGCCTTCCTTGTC-CTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGAC 489117 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || ||||| | |||||||| ||||| ||||| Sbjct 489118 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721613933106