Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1425 154 1e-32
seq4 134 1e-26
>seq1425
Length=145493
Score = 154 bits (170), Expect = 1e-32
Identities = 382/579 (66%), Gaps = 3/579 (1%)
Strand=Plus/Plus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
||||| || ||||| || || || || ||||| || || |||||||||||||| |
Sbjct 66446 ACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACCCCCAGG 66505
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
||||| || |||| | || || ||| ||| |||||| || | || ||| | ||
Sbjct 66506 CCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACGAAAAAC 66565
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
|| || ||| || || || |||||||| | | ||| ||||| ||||||||
Sbjct 66566 TGCGCCAGACAGTGACATGGCGGCAGCGCCATTTTGTGCAAATCTTTCGGATTCCACGCC 66625
Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856
|||| | ||||| | || | || ||| | | | |||| || || | ||||
Sbjct 66626 GACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCGCGCCAGC 66685
Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916
|||||| | |||| || |||||| | | | |||| |||||||||||||||||
Sbjct 66686 TGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCGCCCCAAAGTGC 66745
Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976
| ||||||||||||||||| || |||| ||| |||||||| || |||
Sbjct 66746 CGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCTCCAAGCCCACT 66805
Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGC 7036
||||||||| | ||| | || |||||||| || | ||| | |||
Sbjct 66806 GAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTTTCTCCTTGAGG 66865
Query 7037 TCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAG 7096
|| || | ||||| | || | | |||||| |||||||||||||| || | ||||
Sbjct 66866 TCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGACAGCGCGCCAG 66925
Query 7097 TACACACGTTTCGTCGTCAGCAGCGGAAATTCG---CCCCGAAGGTTGTATCGGGCCTGT 7153
| || || || || |||||||||||||| || |||| ||| ||| || |||
Sbjct 66926 AAAACCCGCTTGGTGGTCAGCAGCGGAAACACGTTATCCCGGAGGGAGTAGCGCATCTGG 66985
Query 7154 GTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192
||||| | || || ||||| | | ||||| ||||
Sbjct 66986 ACCCCGAAAATCGACAGAGTCCCGATGCGGGTCCTGTCC 67024
Score = 154 bits (170), Expect = 1e-32
Identities = 382/579 (66%), Gaps = 3/579 (1%)
Strand=Plus/Minus
Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212
|||| ||||| | | ||||| || || | ||||| ||| || ||| ||| ||
Sbjct 67024 GGACAGGACCCGCATCGGGACTCTGTCGATTTTCGGGGTCCAGATGCGCTACTCCCTCCG 66965
Query 34213 GGG---CGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGA 34269
|| || |||||||||||||| || || || || | |||| | || ||||||||
Sbjct 66964 GGATAACGTGTTTCCGCTGCTGACCACCAAGCGGGTTTTCTGGCGCGCTGTCGTCGAGGA 66905
Query 34270 GCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAA 34329
|||||| |||||| | | || | ||||| | || || ||| | ||| |
Sbjct 66904 GCTGCTCTGGTTCATCAAAGGCTCGACGAATTCGAACGACCTCAAGGAGAAAAACGTGCA 66845
Query 34330 GATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGA 34389
|| |||||||| || | ||| | ||||||||| ||| || ||
Sbjct 66844 CATTTGGGACGCCAACAGCAGTCGCGCGTTTCTGGACTCAGTGGGCTTGGAGGAGTACGA 66785
Query 34390 GGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCG 34449
|||||| ||| |||| || ||||||||||||||||| | |||||||||||||||||
Sbjct 66784 GGAGGGGGACCTGGGGCCCATCTACGGGTTCCAGTGGCGGCACTTTGGGGCGGAGTACAA 66725
Query 34450 GGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC 34509
|||| | | | |||||| || |||| | |||||||||| | || || ||||
Sbjct 66724 GGGGGTCCAGGGGGACTACACGAACGAGGGGGTGGACCAGCTGGCGCGGGTCATACACAC 66665
Query 34510 CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569
| | | ||| || | || | ||||| | |||| |||||||| ||||| ||| |
Sbjct 66664 GATTAGGACGAATCCGAACGATCGGAGGATTATCATGTCGGCGTGGAATCCGAAAGATTT 66605
Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGA 34629
| |||||||| || || || ||| || || || | ||| || | || ||
Sbjct 66604 GCACAAAATGGCGCTGCCGCCATGTCACTGTCTGGCGCAGTTTTTCGTGGCCGAGGGCGA 66545
Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689
|||| ||| ||| || || | |||| || ||||| | |||||||||||||| ||
Sbjct 66544 GCTGAGCTGTTTGCTGTACCAGAGGGCGGGGGATATGGGCCTGGGGGTGCCGTTCAATAT 66485
Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728
|| ||||| || || || || ||||| || |||||
Sbjct 66484 CGCCAGTTATGCGCTTCTTACAAGGATGATTGCACATGT 66446
>seq4
Length=12290766
Score = 134 bits (148), Expect = 1e-26
Identities = 335/509 (66%), Gaps = 0/509 (0%)
Strand=Plus/Plus
Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279
|| || ||| |||| ||||||||||||| |||| || || || |||||| |||| |||
Sbjct 288112 TTCCCTCTGTTGACCACGAAACGTGTGTTCTGGCGCGGAGTCGTTGAGGAGTTGCTTTGG 288171
Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339
||| | | || | |||||| | || || | ||| | || |||||
Sbjct 288172 TTCATCAAAGGCTCAACGAACGCAAACGAATTAAAAGAGAAAAATGTGCATATTTGGGAT 288231
Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399
|| || | | ||||| ||||| || |||| || || |||||||||||
Sbjct 288232 GCGAACAGCACACGAGAGTTTCTCGATTCTGTGGGGCTCAATGAGCGCGAGGAGGGCGAT 288291
Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459
|||| ||||| || || ||||||||| | ||||||||||| ||||| ||||| |
Sbjct 288292 CTGGGACCGGTTTATGGTTTCCAGTGGCGCCACTTTGGGGCCGAGTACAAGGGGATGCAC 288351
Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519
||| || | || || ||||| || | || ||||| || |
Sbjct 288352 TGGGATTACGCCAATCAAGGGATTGACCAATTGGCTCATGTTATCGAAACAATTCGTAAT 288411
Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579
|| || | || || || ||| | ||||| |||||||| || |||| | || |||
Sbjct 288412 AAACCCAACGATAGGAGAATCATAATGTGTGCGTGGAATCCAGTGGATATTCCCGAAATG 288471
Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639
|| ||||| || || ||| |||| || || | || || |||||||| |||| ||
Sbjct 288472 GCCCTCCCGCCTTGTCACTGCCTCGTGCAGTTTTTTGTGGCAAATGGGGAATTGTCGTGT 288531
Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699
| | || ||| | |||| || |||||| | |||||||||||||| ||||| |||||
Sbjct 288532 TTGTTGTACCAAAGGTCGGCTGATATGGGGCTGGGGGTGCCGTTCAATATTGCAAGTTAT 288591
Query 34700 GCTCTGCTCACGTACATGATCGCTCATGT 34728
| || | ||||| ||||| || |||||
Sbjct 288592 TCCTTGTTGACGTATATGATTGCACATGT 288620
Score = 134 bits (148), Expect = 1e-26
Identities = 335/509 (66%), Gaps = 0/509 (0%)
Strand=Plus/Minus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
||||| || ||||| ||||| | || | ||||| ||||| |||||||||||||| | |
Sbjct 288620 ACATGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACCCCCAGC 288561
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
||||| || |||| | ||| || | | || |||| |||||||| || || | ||
Sbjct 288560 CCCATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACAAAAAAC 288501
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
|| |||| ||| || || ||||| ||||| || | |||| || ||||||||
Sbjct 288500 TGCACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTCCACGCA 288441
Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856
||||| | ||| || || || | || || | || ||||| || | ||
Sbjct 288440 CACATTATGATTCTCCTATCGTTGGGTTTATTACGAATTGTTTCGATAACATGAGCCAAT 288381
Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916
||||| || || | || ||| | ||||| ||||| |||||||||||
Sbjct 288380 TGGTCAATCCCTTGATTGGCGTAATCCCAGTGCATCCCCTTGTACTCGGCCCCAAAGTGG 288321
Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976
| ||||||||| || || ||||| |||| ||||||||||| || || ||||
Sbjct 288320 CGCCACTGGAAACCATAAACCGGTCCCAGATCGCCCTCCTCGCGCTCATTGAGCCCCACA 288261
Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGC 7036
|| ||||| ||||| | | || || ||||| || | ||| |
Sbjct 288260 GAATCGAGAAACTCTCGTGTGCTGTTCGCATCCCAAATATGCACATTTTTCTCTTTTAAT 288201
Query 7037 TCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAG 7096
|| || | |||||| | || | | |||||| |||| |||||| || || || ||||
Sbjct 288200 TCGTTTGCGTTCGTTGAGCCTTTGATGAACCAAAGCAACTCCTCAACGACTCCGCGCCAG 288141
Query 7097 TACACACGTTTCGTCGTCAGCAGCGGAAA 7125
||||||||||||| |||| ||| || ||
Sbjct 288140 AACACACGTTTCGTGGTCAACAGAGGGAA 288112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448250733971040
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