Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1425 154 1e-32 seq4 134 1e-26 >seq1425 Length=145493 Score = 154 bits (170), Expect = 1e-32 Identities = 382/579 (66%), Gaps = 3/579 (1%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || ||||| || || || || ||||| || || |||||||||||||| | Sbjct 66446 ACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACCCCCAGG 66505 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || |||| | || || ||| ||| |||||| || | || ||| | || Sbjct 66506 CCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACGAAAAAC 66565 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || || ||| || || || |||||||| | | ||| ||||| |||||||| Sbjct 66566 TGCGCCAGACAGTGACATGGCGGCAGCGCCATTTTGTGCAAATCTTTCGGATTCCACGCC 66625 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856 |||| | ||||| | || | || ||| | | | |||| || || | |||| Sbjct 66626 GACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCGCGCCAGC 66685 Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916 |||||| | |||| || |||||| | | | |||| ||||||||||||||||| Sbjct 66686 TGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCGCCCCAAAGTGC 66745 Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976 | ||||||||||||||||| || |||| ||| |||||||| || ||| Sbjct 66746 CGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCTCCAAGCCCACT 66805 Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGC 7036 ||||||||| | ||| | || |||||||| || | ||| | ||| Sbjct 66806 GAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTTTCTCCTTGAGG 66865 Query 7037 TCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAG 7096 || || | ||||| | || | | |||||| |||||||||||||| || | |||| Sbjct 66866 TCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGACAGCGCGCCAG 66925 Query 7097 TACACACGTTTCGTCGTCAGCAGCGGAAATTCG---CCCCGAAGGTTGTATCGGGCCTGT 7153 | || || || || |||||||||||||| || |||| ||| ||| || ||| Sbjct 66926 AAAACCCGCTTGGTGGTCAGCAGCGGAAACACGTTATCCCGGAGGGAGTAGCGCATCTGG 66985 Query 7154 GTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192 ||||| | || || ||||| | | ||||| |||| Sbjct 66986 ACCCCGAAAATCGACAGAGTCCCGATGCGGGTCCTGTCC 67024 Score = 154 bits (170), Expect = 1e-32 Identities = 382/579 (66%), Gaps = 3/579 (1%) Strand=Plus/Minus Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212 |||| ||||| | | ||||| || || | ||||| ||| || ||| ||| || Sbjct 67024 GGACAGGACCCGCATCGGGACTCTGTCGATTTTCGGGGTCCAGATGCGCTACTCCCTCCG 66965 Query 34213 GGG---CGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGA 34269 || || |||||||||||||| || || || || | |||| | || |||||||| Sbjct 66964 GGATAACGTGTTTCCGCTGCTGACCACCAAGCGGGTTTTCTGGCGCGCTGTCGTCGAGGA 66905 Query 34270 GCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAA 34329 |||||| |||||| | | || | ||||| | || || ||| | ||| | Sbjct 66904 GCTGCTCTGGTTCATCAAAGGCTCGACGAATTCGAACGACCTCAAGGAGAAAAACGTGCA 66845 Query 34330 GATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGA 34389 || |||||||| || | ||| | ||||||||| ||| || || Sbjct 66844 CATTTGGGACGCCAACAGCAGTCGCGCGTTTCTGGACTCAGTGGGCTTGGAGGAGTACGA 66785 Query 34390 GGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCG 34449 |||||| ||| |||| || ||||||||||||||||| | ||||||||||||||||| Sbjct 66784 GGAGGGGGACCTGGGGCCCATCTACGGGTTCCAGTGGCGGCACTTTGGGGCGGAGTACAA 66725 Query 34450 GGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC 34509 |||| | | | |||||| || |||| | |||||||||| | || || |||| Sbjct 66724 GGGGGTCCAGGGGGACTACACGAACGAGGGGGTGGACCAGCTGGCGCGGGTCATACACAC 66665 Query 34510 CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 | | | ||| || | || | ||||| | |||| |||||||| ||||| ||| | Sbjct 66664 GATTAGGACGAATCCGAACGATCGGAGGATTATCATGTCGGCGTGGAATCCGAAAGATTT 66605 Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGA 34629 | |||||||| || || || ||| || || || | ||| || | || || Sbjct 66604 GCACAAAATGGCGCTGCCGCCATGTCACTGTCTGGCGCAGTTTTTCGTGGCCGAGGGCGA 66545 Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 |||| ||| ||| || || | |||| || ||||| | |||||||||||||| || Sbjct 66544 GCTGAGCTGTTTGCTGTACCAGAGGGCGGGGGATATGGGCCTGGGGGTGCCGTTCAATAT 66485 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 || ||||| || || || || ||||| || ||||| Sbjct 66484 CGCCAGTTATGCGCTTCTTACAAGGATGATTGCACATGT 66446 >seq4 Length=12290766 Score = 134 bits (148), Expect = 1e-26 Identities = 335/509 (66%), Gaps = 0/509 (0%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || || ||| |||| ||||||||||||| |||| || || || |||||| |||| ||| Sbjct 288112 TTCCCTCTGTTGACCACGAAACGTGTGTTCTGGCGCGGAGTCGTTGAGGAGTTGCTTTGG 288171 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | | || | |||||| | || || | ||| | || ||||| Sbjct 288172 TTCATCAAAGGCTCAACGAACGCAAACGAATTAAAAGAGAAAAATGTGCATATTTGGGAT 288231 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 || || | | ||||| ||||| || |||| || || ||||||||||| Sbjct 288232 GCGAACAGCACACGAGAGTTTCTCGATTCTGTGGGGCTCAATGAGCGCGAGGAGGGCGAT 288291 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 |||| ||||| || || ||||||||| | ||||||||||| ||||| ||||| | Sbjct 288292 CTGGGACCGGTTTATGGTTTCCAGTGGCGCCACTTTGGGGCCGAGTACAAGGGGATGCAC 288351 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 ||| || | || || ||||| || | || ||||| || | Sbjct 288352 TGGGATTACGCCAATCAAGGGATTGACCAATTGGCTCATGTTATCGAAACAATTCGTAAT 288411 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || || | || || || ||| | ||||| |||||||| || |||| | || ||| Sbjct 288412 AAACCCAACGATAGGAGAATCATAATGTGTGCGTGGAATCCAGTGGATATTCCCGAAATG 288471 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 || ||||| || || ||| |||| || || | || || |||||||| |||| || Sbjct 288472 GCCCTCCCGCCTTGTCACTGCCTCGTGCAGTTTTTTGTGGCAAATGGGGAATTGTCGTGT 288531 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 | | || ||| | |||| || |||||| | |||||||||||||| ||||| ||||| Sbjct 288532 TTGTTGTACCAAAGGTCGGCTGATATGGGGCTGGGGGTGCCGTTCAATATTGCAAGTTAT 288591 Query 34700 GCTCTGCTCACGTACATGATCGCTCATGT 34728 | || | ||||| ||||| || ||||| Sbjct 288592 TCCTTGTTGACGTATATGATTGCACATGT 288620 Score = 134 bits (148), Expect = 1e-26 Identities = 335/509 (66%), Gaps = 0/509 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || ||||| ||||| | || | ||||| ||||| |||||||||||||| | | Sbjct 288620 ACATGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACCCCCAGC 288561 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || |||| | ||| || | | || |||| |||||||| || || | || Sbjct 288560 CCCATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACAAAAAAC 288501 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || |||| ||| || || ||||| ||||| || | |||| || |||||||| Sbjct 288500 TGCACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTCCACGCA 288441 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856 ||||| | ||| || || || | || || | || ||||| || | || Sbjct 288440 CACATTATGATTCTCCTATCGTTGGGTTTATTACGAATTGTTTCGATAACATGAGCCAAT 288381 Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916 ||||| || || | || ||| | ||||| ||||| ||||||||||| Sbjct 288380 TGGTCAATCCCTTGATTGGCGTAATCCCAGTGCATCCCCTTGTACTCGGCCCCAAAGTGG 288321 Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976 | ||||||||| || || ||||| |||| ||||||||||| || || |||| Sbjct 288320 CGCCACTGGAAACCATAAACCGGTCCCAGATCGCCCTCCTCGCGCTCATTGAGCCCCACA 288261 Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGC 7036 || ||||| ||||| | | || || ||||| || | ||| | Sbjct 288260 GAATCGAGAAACTCTCGTGTGCTGTTCGCATCCCAAATATGCACATTTTTCTCTTTTAAT 288201 Query 7037 TCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAG 7096 || || | |||||| | || | | |||||| |||| |||||| || || || |||| Sbjct 288200 TCGTTTGCGTTCGTTGAGCCTTTGATGAACCAAAGCAACTCCTCAACGACTCCGCGCCAG 288141 Query 7097 TACACACGTTTCGTCGTCAGCAGCGGAAA 7125 ||||||||||||| |||| ||| || || Sbjct 288140 AACACACGTTTCGTGGTCAACAGAGGGAA 288112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250733971040