Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq7 100 2e-16 >seq4 Length=12290766 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||||||||| || || || || || |||| ||||| | Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| ||||| ||||| ||||| |||| || | Sbjct 489105 GACACCATCGAAAAT--GTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATC 489048 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || || |||||||| || ||||| |||| || | ||||| ||||||||||||| Sbjct 489047 AACAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACA 488988 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | ||||| ||||||||| |||| || || Sbjct 488987 ACATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939 >seq7 Length=16482863 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| ||| | ||||| ||| || || |||| |||||| | Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || || ||||| |||||||| || |||| | Sbjct 10793554 GAC-----ACAATCGAAAACGTGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAG 10793500 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| | || ||||| ||||| ||||| ||||| || | |||| | ||||| | Sbjct 10793499 ATCAGCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACT 10793440 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| |||||| || | || ||||| |||||| | ||||| ||| Sbjct 10793439 ACAACATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCGTCTCCGTGGTGGC 10793387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || || || || ||||| || || |||||| | || |||| ||||| |||||||||| Sbjct 10794184 GATCAACAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTCCGAT 10794125 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || || ||| | || |||||||||||| || | || ||| Sbjct 10794124 TACAACATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAGGGGAGGC 10794071 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| ||| | ||||| ||| || || | || ||||| | || Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| |||||| || || ||||| |||||| | || | Sbjct 10794466 GA-----TACCATCGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAG 10794412 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || || || || |||||| | || |||| ||||| ||||| || | Sbjct 10794411 ACCAGCAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACT 10794352 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || || | || ||||||||| | ||| | ||||| Sbjct 10794351 ACAACATCCAGAAGGAATCGACGCTCCACTTGGTTTTGAGATTGAGGGGCGG 10794300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853370214014