Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq4 111 1e-19
seq7 100 2e-16
>seq4
Length=12290766
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| ||||||||||| || || || || || |||| ||||| |
Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || | ||| |||||| ||||| ||||| ||||| |||| || |
Sbjct 489105 GACACCATCGAAAAT--GTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATC 489048
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| || || || |||||||| || ||||| |||| || | ||||| |||||||||||||
Sbjct 489047 AACAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACA 488988
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || || ||| | ||||| ||||||||| |||| || ||
Sbjct 488987 ACATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939
>seq7
Length=16482863
Score = 100 bits (110), Expect = 2e-16
Identities = 162/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| ||||| ||| | ||||| ||| || || |||| |||||| |
Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||| ||||||| || || ||||| |||||||| || |||| |
Sbjct 10793554 GAC-----ACAATCGAAAACGTGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAG 10793500
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||| | || ||||| ||||| ||||| ||||| || | |||| | ||||| |
Sbjct 10793499 ATCAGCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACT 10793440
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||||| |||||| || | || ||||| |||||| | ||||| |||
Sbjct 10793439 ACAACATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCGTCTCCGTGGTGGC 10793387
Score = 89.7 bits (98), Expect = 4e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || || || || ||||| || || |||||| | || |||| ||||| ||||||||||
Sbjct 10794184 GATCAACAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTCCGAT 10794125
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||||||||| || || ||| | || |||||||||||| || | || |||
Sbjct 10794124 TACAACATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAGGGGAGGC 10794071
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/232 (68%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || ||||| ||| | ||||| ||| || || | || ||||| | ||
Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| ||| |||| |||||| || || ||||| |||||| | || |
Sbjct 10794466 GA-----TACCATCGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAG 10794412
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||||| || || || || || |||||| | || |||| ||||| ||||| || |
Sbjct 10794411 ACCAGCAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACT 10794352
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| || || || | || ||||||||| | ||| | |||||
Sbjct 10794351 ACAACATCCAGAAGGAATCGACGCTCCACTTGGTTTTGAGATTGAGGGGCGG 10794300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355853370214014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |