Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 147 5e-30 seq4 136 9e-27 >seq7 Length=16482863 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| ||||| || || |||||||| ||||| | | ||| | ||| ||||| || || Sbjct 10794095 GTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCGAGTTG 10794154 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| || | || ||||| || ||||| | || ||||||||||||||||| Sbjct 10794155 TTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTT 10794214 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| ||||| || |||||| ||||| || |||||||| ||||| || || Sbjct 10794215 GGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGTCTTGCCAGT 10794274 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | ||||| Sbjct 10794275 GAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || || || || |||||||| || || | | || | ||| ||||| || || Sbjct 10794323 GTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCGAGTTG 10794382 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| |||||||| | ||||| ||||| || || | |||||||||||||||||||| Sbjct 10794383 TTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTT 10794442 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| |||||||||||||| || ||| || ||||| | ||||| || || || || Sbjct 10794443 AGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTTTTACCAGT 10794502 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | |||||| Sbjct 10794503 CAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || |||||||| |||||||| || || | || || | ||||| |||| ||| Sbjct 10793411 GTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCCTCCAACTG 10793470 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| ||||| || | | ||| || || || |||| || || |||||||| || || Sbjct 10793471 TTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTT 10793530 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||||||||| ||||| || ||| || || ||||||||||| ||||| || Sbjct 10793531 CGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTTTTTCCAGT 10793590 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | ||||| Sbjct 10793591 CAAAGTCTTCACGAAAATTTGCAT 10793614 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || |||||||| || ||||| |||| ||||| | |||||||| || || Sbjct 10792728 TGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGT 10792787 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | | || || || ||||||| ||||| || |||||||| || Sbjct 10792788 TTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGATTTTA 10792847 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || || || ||||| ||| ||| || || | |||||||||||||||||| Sbjct 10792848 GCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGTC 10792907 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 10792908 AAGGTCTTCACGAAAATTTGCAT 10792930 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || || |||||||| ||||| || || | || || | |||||||| ||||| Sbjct 10793183 GTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTG 10793242 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| |||||||| | | || || || || |||| || || |||||||| || || Sbjct 10793243 TTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTT 10793302 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||||||||| ||||| || ||| || || | |||||||||||| || || Sbjct 10793303 CGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGT 10793362 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||||||| || | ||||| Sbjct 10793363 CAAAGTCTTTACGAAGATTTGCAT 10793386 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||| || ||||||||||| || |||||||| || || |||| ||| || Sbjct 10792482 CGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTG 10792541 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| ||| || || || ||||| | | ||| ||||| || |||| ||| Sbjct 10792542 CGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCT 10792601 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || || || || ||||| ||||| || ||||| || ||||| || | Sbjct 10792602 TCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAAC 10792661 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | ||||| || || | ||||| Sbjct 10792662 GTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || ||||| ||||||||||| || || || | ||| || | || ||||| || || Sbjct 10793639 GTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTCTTCAAGTTG 10793698 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | | ||||||||| || || | ||||||||||| |||||||| Sbjct 10793699 TTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 10793758 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || ||||| ||||| ||| ||||| | ||||| ||||| || || Sbjct 10793759 GGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGCCAGT 10793818 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | ||||| Sbjct 10793819 CAGGGTTTTGACGAAAATTTGCAT 10793842 >seq4 Length=12290766 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| || || |||||||| ||||| | | || | |||||| |||||||| Sbjct 488963 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGT 489022 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | || ||||| || || |||| |||||||||||||| || || Sbjct 489023 TTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTTTC 489082 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || |||||||||||||| || || ||||| |||||||| ||||| || || Sbjct 489083 GCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTC 489142 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || | ||||| Sbjct 489143 AGAGTTTTCACGAAAATTTGCAT 489165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159121078895930