Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq7 147 5e-30
seq4 136 9e-27
>seq7
Length=16482863
Score = 147 bits (162), Expect = 5e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| ||||| || || |||||||| ||||| | | ||| | ||| ||||| || ||
Sbjct 10794095 GTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCGAGTTG 10794154
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
|| || ||||| || | || ||||| || ||||| | || |||||||||||||||||
Sbjct 10794155 TTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTT 10794214
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||| ||||| ||||| || |||||| ||||| || |||||||| ||||| || ||
Sbjct 10794215 GGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGTCTTGCCAGT 10794274
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || | |||||
Sbjct 10794275 GAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| || || || || || |||||||| || || | | || | ||| ||||| || ||
Sbjct 10794323 GTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCGAGTTG 10794382
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||||| |||||||| | ||||| ||||| || || | ||||||||||||||||||||
Sbjct 10794383 TTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTT 10794442
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||| |||||||||||||| || ||| || ||||| | ||||| || || || ||
Sbjct 10794443 AGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTTTTACCAGT 10794502
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
| |||||| || || | ||||||
Sbjct 10794503 CAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| || || |||||||| |||||||| || || | || || | ||||| |||| |||
Sbjct 10793411 GTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCCTCCAACTG 10793470
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||||| ||||| || | | ||| || || || |||| || || |||||||| || ||
Sbjct 10793471 TTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTT 10793530
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|||||||||||||| ||||| || ||| || || ||||||||||| ||||| ||
Sbjct 10793531 CGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTTTTTCCAGT 10793590
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
| |||||| || || | |||||
Sbjct 10793591 CAAAGTCTTCACGAAAATTTGCAT 10793614
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || || || |||||||| || ||||| |||| ||||| | |||||||| || ||
Sbjct 10792728 TGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGT 10792787
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
||||| || ||||| | | || || || ||||||| ||||| || |||||||| ||
Sbjct 10792788 TTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGATTTTA 10792847
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || || || || ||||| ||| ||| || || | ||||||||||||||||||
Sbjct 10792848 GCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGTC 10792907
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
| ||||| || || | |||||
Sbjct 10792908 AAGGTCTTCACGAAAATTTGCAT 10792930
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| || || || |||||||| ||||| || || | || || | |||||||| |||||
Sbjct 10793183 GTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTG 10793242
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||||| |||||||| | | || || || || |||| || || |||||||| || ||
Sbjct 10793243 TTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTT 10793302
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| ||||||||||| ||||| || ||| || || | |||||||||||| || ||
Sbjct 10793303 CGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGT 10793362
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
| ||||||||| || | |||||
Sbjct 10793363 CAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 120 bits (132), Expect = 7e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || ||| || ||||||||||| || |||||||| || || |||| ||| ||
Sbjct 10792482 CGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTG 10792541
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| |||||||||| ||| || || || ||||| | | ||| ||||| || |||| |||
Sbjct 10792542 CGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCT 10792601
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||| || || || || ||||| ||||| || ||||| || ||||| || |
Sbjct 10792602 TCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAAC 10792661
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || || || | ||||| || || | |||||
Sbjct 10792662 GTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| || ||||| ||||||||||| || || || | ||| || | || ||||| || ||
Sbjct 10793639 GTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTCTTCAAGTTG 10793698
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
|| || |||||||| | | ||||||||| || || | ||||||||||| ||||||||
Sbjct 10793699 TTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 10793758
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| || || || ||||| ||||| ||| ||||| | ||||| ||||| || ||
Sbjct 10793759 GGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGCCAGT 10793818
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
|| || || || || | |||||
Sbjct 10793819 CAGGGTTTTGACGAAAATTTGCAT 10793842
>seq4
Length=12290766
Score = 136 bits (150), Expect = 9e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||| ||||| || || |||||||| ||||| | | || | |||||| ||||||||
Sbjct 488963 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGT 489022
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || || || | || ||||| || || |||| |||||||||||||| || ||
Sbjct 489023 TTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTTTC 489082
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || |||||||||||||| || || ||||| |||||||| ||||| || ||
Sbjct 489083 GCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTC 489142
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
||||| || || || | |||||
Sbjct 489143 AGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159121078895930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |