Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 3e-15 >seq7 Length=16482863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || || ||||| || || ||| || || || || || ||||| Sbjct 10794068 CATGCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATC 10794127 Query 39114 GG-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 || |||| || ||| |||| || || ||||| || || || || | |||||| || || | Sbjct 10794128 GGACAAG-GTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTG 10794186 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || ||||| || | | |||||| | || Sbjct 10794187 GAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCT 10794246 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||| | || || || || || ||||| ||||||||||| Sbjct 10794247 CAACTTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534700548866