Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7 170 5e-37 seq4 149 1e-30 seq2 134 3e-26 >seq7 Length=16482863 Score = 170 bits (188), Expect = 5e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 |||||| |||||||||||||||| |||||| |||| | ||| | || ||||| || || Sbjct 10793639 GTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTCTTCAAGTTG 10793698 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||||||||| | || ||||||||| || || ||||||||||||||||||||||| Sbjct 10793699 TTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 10793758 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| || ||||| || || | ||| || || || ||||| |||||||| || Sbjct 10793759 GGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGCCAGT 10793818 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| | |||||| Sbjct 10793819 CAGGGTTTTGACGAAAATTTGCAT 10793842 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||||||||||||||| || |||| ||||||||||| | ||| | || |||||||| || Sbjct 10792955 GTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCTAGTTG 10793014 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| ||||| | || ||||||||| || || ||||| || |||||||| ||||| Sbjct 10793015 TTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTT 10793074 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || || || || || | ||| || || | ||||| || ||||| || Sbjct 10793075 AGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTGATGGTTTTGCCAGT 10793134 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || |||||| | ||| | |||||| Sbjct 10793135 CAGAGTTTTAACGAAAATTTGCAT 10793158 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | |||||| || ||||| || |||| ||||| || | |||||| | || Sbjct 10794311 TCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCC 10794370 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| || || || ||||||||||| | ||||| ||||| || || ||||||||||| Sbjct 10794371 GTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTT 10794430 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| || || ||||||||| || |||| || || || || ||||| Sbjct 10794431 GTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGAT 10794490 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || |||||||| || | ||| | ||||| Sbjct 10794491 GGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | | ||| || || ||||||||||| ||||||| |||||| || | | || Sbjct 10792482 CGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTG 10792541 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | ||| || || || ||||| | || ||| ||||| || ||||||||| Sbjct 10792542 CGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCT 10792601 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| || || ||||||| ||| || ||||| || | || || || ||| Sbjct 10792602 TCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAAC 10792661 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||| || || | ||| | |||||| Sbjct 10792662 GTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 |||||| || ||||||||||| | ||||| |||| | ||||| |||||||| ||||| Sbjct 10793183 GTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTG 10793242 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || |||||||| | | || || || || ||||| || || ||||| || || || Sbjct 10793243 TTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTT 10793302 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || |||||| ||||| || | ||| || || || ||||||||||| || || Sbjct 10793303 CGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGT 10793362 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| ||| | |||||| Sbjct 10793363 CAAAGTCTTTACGAAGATTTGCAT 10793386 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||||||||| | ||| || || | || || | ||||||||| || || Sbjct 10792728 TGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGT 10792787 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | | || || || || ||||| ||||| || || ||||| ||| Sbjct 10792788 TTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGAT-TTT 10792846 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| || || |||||||||| ||| || || || ||||||||||| ||||| Sbjct 10792847 AGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGT 10792906 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||| || || | ||| | |||||| Sbjct 10792907 CAAGGTCTTCACGAAAATTTGCAT 10792930 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || |||||||| || |||| |||||||| | | || | |||||||||||| || Sbjct 10793867 GTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTCTAGTTG 10793926 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||||| || ||||| | || ||||||||| || || || |||||||| || || ||||| Sbjct 10793927 TTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGAATCTT 10793986 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||| || ||||| || | ||| || || || || || || || || || Sbjct 10793987 AGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTTCCCAGT 10794046 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||| || || | ||| | ||||| Sbjct 10794047 CAAGGTCTTGACGAAGATCTGCAT 10794070 >seq4 Length=12290766 Score = 149 bits (164), Expect = 1e-30 Identities = 157/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| || |||| |||||||||| |||||| | ||||| || ||||| Sbjct 488963 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGT 489022 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | || ||||| ||||| ||||| ||||||||||| || || ||| Sbjct 489023 TTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAAT-TTT 489081 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| ||||||||||||||| | || || || | ||||| |||||||| || Sbjct 489082 CGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGT 489141 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || |||||| | ||| | |||||| Sbjct 489142 CAGAGTTTTCACGAAAATTTGCAT 489165 >seq2 Length=15265516 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| | || ||||| || |||||||| || |||| ||||||||||| | || | Sbjct 12970342 AGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGT 12970283 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || ||||| ||||| |||||||| || ||||| || || || ||||| || || Sbjct 12970282 CCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCT 12970223 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || || ||||| |||||| ||||| || ||||| | || || || | ||| Sbjct 12970222 TTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTG 12970163 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || |||||||| |||| ||||| | ||| | |||||| Sbjct 12970162 ATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATT 12970124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192499388484908