Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq7 170 5e-37
seq4 149 1e-30
seq2 134 3e-26
>seq7
Length=16482863
Score = 170 bits (188), Expect = 5e-37
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
|||||| |||||||||||||||| |||||| |||| | ||| | || ||||| || ||
Sbjct 10793639 GTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTCTTCAAGTTG 10793698
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
|| ||||||||||| | || ||||||||| || || |||||||||||||||||||||||
Sbjct 10793699 TTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 10793758
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| ||| || ||||| || || | ||| || || || ||||| |||||||| ||
Sbjct 10793759 GGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGCCAGT 10793818
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| | ||| | ||||||
Sbjct 10793819 CAGGGTTTTGACGAAAATTTGCAT 10793842
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||||||||||||||| || |||| ||||||||||| | ||| | || |||||||| ||
Sbjct 10792955 GTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCTAGTTG 10793014
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
|| ||||| ||||| | || ||||||||| || || ||||| || |||||||| |||||
Sbjct 10793015 TTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTT 10793074
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| || || || || || || | ||| || || | ||||| || ||||| ||
Sbjct 10793075 AGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTGATGGTTTTGCCAGT 10793134
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
|| |||||| | ||| | ||||||
Sbjct 10793135 CAGAGTTTTAACGAAAATTTGCAT 10793158
Score = 141 bits (156), Expect = 2e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | |||||| || ||||| || |||| ||||| || | |||||| | ||
Sbjct 10794311 TCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCC 10794370
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| || || || ||||||||||| | ||||| ||||| || || |||||||||||
Sbjct 10794371 GTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTT 10794430
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||| |||||||| || || ||||||||| || |||| || || || || |||||
Sbjct 10794431 GTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGAT 10794490
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || |||||||| || | ||| | |||||
Sbjct 10794491 GGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 138 bits (152), Expect = 3e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | | ||| || || ||||||||||| ||||||| |||||| || | | ||
Sbjct 10792482 CGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTG 10792541
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| | ||| || || || ||||| | || ||| ||||| || |||||||||
Sbjct 10792542 CGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCT 10792601
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||| ||||| || || ||||||| ||| || ||||| || | || || || |||
Sbjct 10792602 TCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAAC 10792661
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || || || ||||| || || | ||| | ||||||
Sbjct 10792662 GTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 138 bits (152), Expect = 3e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
|||||| || ||||||||||| | ||||| |||| | ||||| |||||||| |||||
Sbjct 10793183 GTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTG 10793242
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
|| || |||||||| | | || || || || ||||| || || ||||| || || ||
Sbjct 10793243 TTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTT 10793302
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| || |||||| ||||| || | ||| || || || ||||||||||| || ||
Sbjct 10793303 CGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGT 10793362
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| ||| | ||||||
Sbjct 10793363 CAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 127 bits (140), Expect = 5e-24
Identities = 152/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || || ||||||||||| | ||| || || | || || | ||||||||| || ||
Sbjct 10792728 TGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGT 10792787
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||| ||||| | | || || || || ||||| ||||| || || ||||| |||
Sbjct 10792788 TTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGAT-TTT 10792846
Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| || ||| || || |||||||||| ||| || || || ||||||||||| |||||
Sbjct 10792847 AGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGT 10792906
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
||| || || | ||| | ||||||
Sbjct 10792907 CAAGGTCTTCACGAAAATTTGCAT 10792930
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||| || |||||||| || |||| |||||||| | | || | |||||||||||| ||
Sbjct 10793867 GTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTCTAGTTG 10793926
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
||||| || ||||| | || ||||||||| || || || |||||||| || || |||||
Sbjct 10793927 TTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGAATCTT 10793986
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| || ||| || ||||| || | ||| || || || || || || || || ||
Sbjct 10793987 AGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTTCCCAGT 10794046
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
||| || || | ||| | |||||
Sbjct 10794047 CAAGGTCTTGACGAAGATCTGCAT 10794070
>seq4
Length=12290766
Score = 149 bits (164), Expect = 1e-30
Identities = 157/204 (77%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || |||||||| || |||| |||||||||| |||||| | ||||| || |||||
Sbjct 488963 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGT 489022
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || || || | || ||||| ||||| ||||| ||||||||||| || || |||
Sbjct 489023 TTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAAT-TTT 489081
Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| || ||| ||||||||||||||| | || || || | ||||| |||||||| ||
Sbjct 489082 CGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGT 489141
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
|| |||||| | ||| | ||||||
Sbjct 489142 CAGAGTTTTCACGAAAATTTGCAT 489165
>seq2
Length=15265516
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
||||| | || ||||| || |||||||| || |||| ||||||||||| | || |
Sbjct 12970342 AGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGT 12970283
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
||||| || ||||| ||||| |||||||| || ||||| || || || ||||| || ||
Sbjct 12970282 CCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCT 12970223
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
|| || || ||||| |||||| ||||| || ||||| | || || || | |||
Sbjct 12970222 TTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTG 12970163
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| |||||||| |||| ||||| | ||| | ||||||
Sbjct 12970162 ATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATT 12970124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192499388484908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |