Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq1425 138 9e-28
>seq1425
Length=145493
Score = 138 bits (152), Expect = 9e-28
Identities = 382/587 (65%), Gaps = 9/587 (2%)
Strand=Plus/Plus
Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776
|| || || || || ||||| || || || | || |||||||| || || ||||||
Sbjct 66440 CCCGTAACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACC 66499
Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836
|| || ||||| ||||| | ||||||||| ||| || ||||| || ||| ||||
Sbjct 66500 CCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACG 66559
Query 29837 TAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTT 29895
||||||| || | || || || || || || ||||| ||| ||||| || ||
Sbjct 66560 AAAAACTGCGCCA-GACAGTGACATGGCGGCAGCGCCATTTTGTGCAAATCTTTCGGATT 66618
Query 29896 CCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 29955
||| || ||| ||| || | || || | || || |||| || || | | |
Sbjct 66619 CCACGCCGACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCG 66678
Query 29956 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNC 30015
|||||| ||||||||| || |||||| |
Sbjct 66679 CGCCAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCGCCCC 66738
Query 30016 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30075
|| |||| ||||||||||||||| | || |||||||| ||||| || | ||| ||
Sbjct 66739 AAAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCTCCAA 66798
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
|||| ||||| ||| | | | |||||||||||| || | || |||||
Sbjct 66799 GCCCACTGAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTTTCTC 66858
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195
||| || || || || || || ||| ||| |||||| ||||||||||| ||||| ||
Sbjct 66859 CTTGAGGTCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGACAGC 66918
Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCTTGAGGCCGTACC 30251
||| || |||| |||||| || || || |||||| | |||| |||| ||| |
Sbjct 66919 GCGCCAGAAAACCCGCTTGGTGGTCAGCAGCGGAAACACGTTATCCC-GGAGGGAGTAGC 66977
Query 30252 TCGCCTGAGACCCAAACATGGACAAGACTCCCG-TGCCTGTCCTGTC 30297
| ||| ||| || || ||| ||| ||||| ||| ||||||||
Sbjct 66978 GCATCTGGACCCCGAAAATCGAC-AGAGTCCCGATGCGGGTCCTGTC 67023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406152893862652
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |