Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1425 138 9e-28 >seq1425 Length=145493 Score = 138 bits (152), Expect = 9e-28 Identities = 382/587 (65%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || || || || || ||||| || || || | || |||||||| || || |||||| Sbjct 66440 CCCGTAACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACC 66499 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 || || ||||| ||||| | ||||||||| ||| || ||||| || ||| |||| Sbjct 66500 CCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACG 66559 Query 29837 TAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTT 29895 ||||||| || | || || || || || || ||||| ||| ||||| || || Sbjct 66560 AAAAACTGCGCCA-GACAGTGACATGGCGGCAGCGCCATTTTGTGCAAATCTTTCGGATT 66618 Query 29896 CCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 29955 ||| || ||| ||| || | || || | || || |||| || || | | | Sbjct 66619 CCACGCCGACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCG 66678 Query 29956 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNC 30015 |||||| ||||||||| || |||||| | Sbjct 66679 CGCCAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCGCCCC 66738 Query 30016 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30075 || |||| ||||||||||||||| | || |||||||| ||||| || | ||| || Sbjct 66739 AAAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCTCCAA 66798 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 |||| ||||| ||| | | | |||||||||||| || | || ||||| Sbjct 66799 GCCCACTGAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTTTCTC 66858 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 ||| || || || || || || ||| ||| |||||| ||||||||||| ||||| || Sbjct 66859 CTTGAGGTCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGACAGC 66918 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCTTGAGGCCGTACC 30251 ||| || |||| |||||| || || || |||||| | |||| |||| ||| | Sbjct 66919 GCGCCAGAAAACCCGCTTGGTGGTCAGCAGCGGAAACACGTTATCCC-GGAGGGAGTAGC 66977 Query 30252 TCGCCTGAGACCCAAACATGGACAAGACTCCCG-TGCCTGTCCTGTC 30297 | ||| ||| || || ||| ||| ||||| ||| |||||||| Sbjct 66978 GCATCTGGACCCCGAAAATCGAC-AGAGTCCCGATGCGGGTCCTGTC 67023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406152893862652