Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq5 340 2e-88
>seq5
Length=15459558
Score = 340 bits (376), Expect = 2e-88
Identities = 601/870 (69%), Gaps = 7/870 (1%)
Strand=Plus/Minus
Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316
|| |||||||| ||| ||| || |||||||| || |||||||| |||||| |
Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATC 2625001
Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376
||| ||||| |||||||| || |||||| ||| || ||| | | | | |
Sbjct 2625000 GTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAAC 2624941
Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436
|||| ||| || |||||||| || || |||| ||| | ||||||| |||||||| |
Sbjct 2624940 AATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATG 2624881
Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496
|| || |||| || | ||||| || || | || || | || || ||| ||| ||
Sbjct 2624880 CTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATG 2624821
Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556
|| || ||||| || || || | || |||| |||| ||||| ||||||
Sbjct 2624820 CTTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAA 2624761
Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616
|| ||||| | || ||||| || ||||||||| || ||||| || | || |||||
Sbjct 2624760 TCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATA 2624701
Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676
| | | |||||||||||| || || | ||||| ||||| ||||| || |||||
Sbjct 2624700 AGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCG 2624641
Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTT 4735
|||||||||||||| || | ||| || || | || ||| | ||| |||||
Sbjct 2624640 ACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTT-ATCCACAG 2624582
Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTT 4795
|| ||||||| || || |||||||| || || | || | || || || || ||
Sbjct 2624581 CAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAA-GA 2624523
Query 4796 ACT-TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854
||| || || || || ||| || || || || | | ||| ||||| || ||||
Sbjct 2624522 ACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAAT 2624463
Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914
| || ||||| ||||| || || || ||||||||||| | |||||| || ||||| || |
Sbjct 2624462 GGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCT 2624403
Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974
| | | || || || || | ||||||||| || || |||||| |||||| ||||| |
Sbjct 2624402 CCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATG 2624343
Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGCA 5031
| | ||| || || || ||||| |||| |||| || ||| || ||||||| | ||
Sbjct 2624342 CAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCA 2624283
Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091
||||||| | ||||| |||||||| ||||||||||| |||||||||| |||||
Sbjct 2624282 AATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATT 2624223
Query 5092 TAGACCAAATATCAGGATACTGAATCGGAA 5121
| |||||| || || ||||| || ||||
Sbjct 2624222 TGTCCCAAATGTCGGGGTACTGGATGGGAA 2624193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427038763883306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |