Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1425 174 1e-38 >seq1425 Length=145493 Score = 174 bits (192), Expect = 1e-38 Identities = 348/516 (67%), Gaps = 0/516 (0%) Strand=Plus/Plus Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 || || || || || ||||| || || || | || |||||||| || || || ||| Sbjct 66440 CCCGTAACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACC 66499 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACG 27330 || || ||||| ||||||| ||||||||| ||| ||| ||||| || ||| ||| Sbjct 66500 CCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACG 66559 Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 27390 ||||||| | ||| || || || || ||||| | ||| ||||| || ||| Sbjct 66560 AAAAACTGCGCCAGACAGTGACATGGCGGCAGCGCCATTTTGTGCAAATCTTTCGGATTC 66619 Query 27391 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 27450 || || ||| ||| || | || || | || || |||| || || | | | Sbjct 66620 CACGCCGACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCGC 66679 Query 27451 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCG 27510 |||||| ||||||||| || |||||| || | || ||||||| || || Sbjct 66680 GCCAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCGCCCCA 66739 Query 27511 AAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 27570 || |||| ||| ||||||||||| | || |||||||| ||||| || | ||| ||| Sbjct 66740 AAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCTCCAAG 66799 Query 27571 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 27630 ||| ||||| ||| | | | |||||||||||| || | || ||||| Sbjct 66800 CCCACTGAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTTTCTCC 66859 Query 27631 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 27690 ||| || || || || || || ||| ||| |||||| ||||||||||| ||||| || Sbjct 66860 TTGAGGTCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGACAGCG 66919 Query 27691 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 ||| || |||| |||||| || || || |||||| Sbjct 66920 CGCCAGAAAACCCGCTTGGTGGTCAGCAGCGGAAAC 66955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369497823985742