Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 306 5e-78 seq5 239 6e-58 >seq4 Length=12290766 Score = 306 bits (338), Expect = 5e-78 Identities = 730/1103 (66%), Gaps = 13/1103 (1%) Strand=Plus/Minus Query 76762 TTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGAT 76821 ||| ||| | ||||||| ||| || ||||| ||| || || ||||| || | || || Sbjct 1759650 TTAATTTGCTTTTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAAT 1759591 Query 76822 AGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGG 76881 ||||||| || || |||| |||| | ||| ||||||||||||||| | || Sbjct 1759590 AGTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCC 1759531 Query 76882 AATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTC 76941 |||| | || | || ||||||||||||||||||||||| || || || || || |||| Sbjct 1759530 CATAATTCGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTC 1759471 Query 76942 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 77001 ||||||||||||| | ||||| || || | ||| ||||| | ||||| | | || Sbjct 1759470 TATCAGCCGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTT 1759411 Query 77002 GTTTGATATCATCTGGAA-----GGTTTGTATTTTGAATGGAACCACCATCTGATATAAT 77056 |||| | ||| || |||| || || |||||||| |||||| || | ||||| Sbjct 1759410 GTTTCAAATCGTCGGGAATCCCCGGAATG--TTTTGAATCGAACCATAATTCGCAATAAT 1759353 Query 77057 TGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGG 77116 |||||| || ||| | ||| | |||||| || ||| | | || || || | Sbjct 1759352 CTGATTCTTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTG 1759293 Query 77117 ATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGG 77176 ||| || | |||||| || |||||||| || | | || |||||| || || || Sbjct 1759292 ATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGG 1759233 Query 77177 TTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCAC 77236 ||| |||||||| || ||||||||||| ||||| ||||| || ||||| || |||| Sbjct 1759232 TTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAA 1759173 Query 77237 CAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCA 77296 | || ||| | | ||| | | | |||||| | ||| | || ||||||||| Sbjct 1759172 AAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCA 1759113 Query 77297 AAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGA 77356 | || || ||| || |||| | ||||| || | | || | ||| | ||| Sbjct 1759112 CAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGA 1759053 Query 77357 TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 || | ||| || ||||| || || | |||| || ||||| ||||| || ||||| || Sbjct 1759052 CCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGC 1758993 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476 |||||||||| ||||||||||| | | || || ||| || || |||||||| Sbjct 1758992 GCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAA 1758933 Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 || | | ||||| || ||||| || | |||||||| ||||| || | || || Sbjct 1758932 AGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCT 1758873 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 || | | ||| || | || ||||| | |||||| ||||| | || || | ||| Sbjct 1758872 GTGGCGCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTT 1758813 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA------ 77650 || | ||| | | || ||||| | ||||| | || ||| || | Sbjct 1758812 GTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCT 1758753 Query 77651 TCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTC 77710 || | || | || |||||||| | || || || || | ||||| || || | || Sbjct 1758752 CCTGTCCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTC 1758693 Query 77711 ATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAG 77770 | | | | | | | ||| || || |||| ||| || | |||||||||| | Sbjct 1758692 GTCGGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAA 1758633 Query 77771 ATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGT 77830 ||||||||||||||| || | || |||| ||| || || || || | || || || || Sbjct 1758632 ATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGT 1758573 Query 77831 TTCAATCTGTGATTCGATAATAG 77853 || | ||| || || ||||| Sbjct 1758572 CTCCACCTGGGAGACGCAAATAG 1758550 >seq5 Length=15459558 Score = 239 bits (264), Expect = 6e-58 Identities = 590/885 (67%), Gaps = 19/885 (2%) Strand=Plus/Minus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 ||||| | || || ||||| ||||| ||||| || ||||| || |||||||| Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960 || ||| | ||| ||||| || ||||| || || || ||||| | | || || Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAAC 2624950 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || | || ||| || || || ||||| || ||| ||||| | || |||||| Sbjct 2624949 TCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATT 2624890 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080 || || | | ||||||| ||| || || | || || | ||||| |||| || || Sbjct 2624889 CCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCT 2624830 Query 48081 ACTATTAT-CGATGTTACCGTTTCCTCACTTGGTGGA----TACAACAAATGTTTAAACA 48135 || || | || ||||| || |||| | | || ||| || |||| Sbjct 2624829 TGGATAATGCTTTGAATCCGTT--CT---TTGGACGGCTTCTGCACCAAGTGAGAGAACA 2624775 Query 48136 TTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195 | ||||| |||||||| ||||| || || || || || ||| | ||| || ||||||| Sbjct 2624774 TCAAACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATG 2624715 Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAA 48254 ||||||| ||||| || || ||||| ||||| || || | || |||| | ||||| Sbjct 2624714 TGAGACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGC-AAAGCTGCCAGAG 2624656 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC-TTC--G 48311 ||||| || ||||| ||||| ||||| || | || || || || | || ||| | Sbjct 2624655 AAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTG 2624596 Query 48312 TTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATA 48371 ||| ||||||| | ||||| || ||||||||||| ||||| |||| || || || Sbjct 2624595 CTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATC 2624536 Query 48372 GCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 ||||| || | || | || || | | || || ||| || || || || | || Sbjct 2624535 GCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTG 2624476 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || || || || |||||||| || || || || |||||||| || | ||||| Sbjct 2624475 TACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCG 2624416 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || | || |||||| | || | || | | || || || || ||||| ||| Sbjct 2624415 GTCACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAG 2624356 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT---TTA 48608 || || |||||||| | || || ||| || || ||| | ||| ||||| || Sbjct 2624355 GCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTC 2624296 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 |||||||| | | |||||| || | |||||||||||| | |||||||| || || || Sbjct 2624295 TTCCAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCC 2624236 Query 48669 GCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAA 48713 |||| || || | | ||| || || ||| |||| ||||||| Sbjct 2624235 GCTTGCTTGTATTTGTCCCAAATGTCGGGGTACTGGA-TGGGAAA 2624192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694650721244480