Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4 306 5e-78
seq5 239 6e-58
>seq4
Length=12290766
Score = 306 bits (338), Expect = 5e-78
Identities = 730/1103 (66%), Gaps = 13/1103 (1%)
Strand=Plus/Minus
Query 76762 TTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGAT 76821
||| ||| | ||||||| ||| || ||||| ||| || || ||||| || | || ||
Sbjct 1759650 TTAATTTGCTTTTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAAT 1759591
Query 76822 AGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGG 76881
||||||| || || |||| |||| | ||| ||||||||||||||| | ||
Sbjct 1759590 AGTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCC 1759531
Query 76882 AATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTC 76941
|||| | || | || ||||||||||||||||||||||| || || || || || ||||
Sbjct 1759530 CATAATTCGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTC 1759471
Query 76942 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 77001
||||||||||||| | ||||| || || | ||| ||||| | ||||| | | ||
Sbjct 1759470 TATCAGCCGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTT 1759411
Query 77002 GTTTGATATCATCTGGAA-----GGTTTGTATTTTGAATGGAACCACCATCTGATATAAT 77056
|||| | ||| || |||| || || |||||||| |||||| || | |||||
Sbjct 1759410 GTTTCAAATCGTCGGGAATCCCCGGAATG--TTTTGAATCGAACCATAATTCGCAATAAT 1759353
Query 77057 TGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGG 77116
|||||| || ||| | ||| | |||||| || ||| | | || || || |
Sbjct 1759352 CTGATTCTTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTG 1759293
Query 77117 ATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGG 77176
||| || | |||||| || |||||||| || | | || |||||| || || ||
Sbjct 1759292 ATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGG 1759233
Query 77177 TTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCAC 77236
||| |||||||| || ||||||||||| ||||| ||||| || ||||| || ||||
Sbjct 1759232 TTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAA 1759173
Query 77237 CAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCA 77296
| || ||| | | ||| | | | |||||| | ||| | || |||||||||
Sbjct 1759172 AAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCA 1759113
Query 77297 AAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGA 77356
| || || ||| || |||| | ||||| || | | || | ||| | |||
Sbjct 1759112 CAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGA 1759053
Query 77357 TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416
|| | ||| || ||||| || || | |||| || ||||| ||||| || ||||| ||
Sbjct 1759052 CCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGC 1758993
Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476
|||||||||| ||||||||||| | | || || ||| || || ||||||||
Sbjct 1758992 GCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAA 1758933
Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536
|| | | ||||| || ||||| || | |||||||| ||||| || | || ||
Sbjct 1758932 AGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCT 1758873
Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596
|| | | ||| || | || ||||| | |||||| ||||| | || || | |||
Sbjct 1758872 GTGGCGCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTT 1758813
Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA------ 77650
|| | ||| | | || ||||| | ||||| | || ||| || |
Sbjct 1758812 GTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCT 1758753
Query 77651 TCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTC 77710
|| | || | || |||||||| | || || || || | ||||| || || | ||
Sbjct 1758752 CCTGTCCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTC 1758693
Query 77711 ATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAG 77770
| | | | | | | ||| || || |||| ||| || | |||||||||| |
Sbjct 1758692 GTCGGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAA 1758633
Query 77771 ATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGT 77830
||||||||||||||| || | || |||| ||| || || || || | || || || ||
Sbjct 1758632 ATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGT 1758573
Query 77831 TTCAATCTGTGATTCGATAATAG 77853
|| | ||| || || |||||
Sbjct 1758572 CTCCACCTGGGAGACGCAAATAG 1758550
>seq5
Length=15459558
Score = 239 bits (264), Expect = 6e-58
Identities = 590/885 (67%), Gaps = 19/885 (2%)
Strand=Plus/Minus
Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900
||||| | || || ||||| ||||| ||||| || ||||| || ||||||||
Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010
Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960
|| ||| | ||| ||||| || ||||| || || || ||||| | | || ||
Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAAC 2624950
Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020
|| | || ||| || || || ||||| || ||| ||||| | || ||||||
Sbjct 2624949 TCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATT 2624890
Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080
|| || | | ||||||| ||| || || | || || | ||||| |||| || ||
Sbjct 2624889 CCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCT 2624830
Query 48081 ACTATTAT-CGATGTTACCGTTTCCTCACTTGGTGGA----TACAACAAATGTTTAAACA 48135
|| || | || ||||| || |||| | | || ||| || ||||
Sbjct 2624829 TGGATAATGCTTTGAATCCGTT--CT---TTGGACGGCTTCTGCACCAAGTGAGAGAACA 2624775
Query 48136 TTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195
| ||||| |||||||| ||||| || || || || || ||| | ||| || |||||||
Sbjct 2624774 TCAAACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATG 2624715
Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAA 48254
||||||| ||||| || || ||||| ||||| || || | || |||| | |||||
Sbjct 2624714 TGAGACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGC-AAAGCTGCCAGAG 2624656
Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC-TTC--G 48311
||||| || ||||| ||||| ||||| || | || || || || | || ||| |
Sbjct 2624655 AAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTG 2624596
Query 48312 TTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATA 48371
||| ||||||| | ||||| || ||||||||||| ||||| |||| || || ||
Sbjct 2624595 CTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATC 2624536
Query 48372 GCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431
||||| || | || | || || | | || || ||| || || || || | ||
Sbjct 2624535 GCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTG 2624476
Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491
||||| || || || || |||||||| || || || || |||||||| || | |||||
Sbjct 2624475 TACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCG 2624416
Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551
|| | || |||||| | || | || | | || || || || ||||| |||
Sbjct 2624415 GTCACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAG 2624356
Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT---TTA 48608
|| || |||||||| | || || ||| || || ||| | ||| ||||| ||
Sbjct 2624355 GCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTC 2624296
Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668
|||||||| | | |||||| || | |||||||||||| | |||||||| || || ||
Sbjct 2624295 TTCCAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCC 2624236
Query 48669 GCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAA 48713
|||| || || | | ||| || || ||| |||| |||||||
Sbjct 2624235 GCTTGCTTGTATTTGTCCCAAATGTCGGGGTACTGGA-TGGGAAA 2624192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694650721244480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |