Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 343 2e-89 seq5 215 7e-51 >seq4 Length=12290766 Score = 343 bits (380), Expect = 2e-89 Identities = 960/1470 (65%), Gaps = 15/1470 (1%) Strand=Plus/Minus Query 75357 TTATTTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGAT 75416 ||| ||| | ||||||| ||||| ||||||||| | || ||||| || | || || Sbjct 1759650 TTAATTTGCTTTTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAAT 1759591 Query 75417 AGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGG 75476 ||||||| || || |||| |||| | ||| ||||||||||||||| | | Sbjct 1759590 AGTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCC 1759531 Query 75477 AATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTC 75536 |||| |||| | || ||||||||||||||||||||||| || || || || || |||| Sbjct 1759530 CATAATTCGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTC 1759471 Query 75537 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 75596 ||||||||||||| | ||||| || || | ||| ||||| | ||||| | | || Sbjct 1759470 TATCAGCCGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTT 1759411 Query 75597 GTTTGATATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTG 75653 |||| | ||| || |||| | | |||||||| || || || | ||||| Sbjct 1759410 GTTTCAAATCGTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCT 1759351 Query 75654 TATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 75713 |||||| ||| ||| | ||| | ||||| || ||| | | || || || ||| Sbjct 1759350 GATTCTTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGAT 1759291 Query 75714 TAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTT 75773 | || | |||||| || |||||||| || | | || |||||| || || |||| Sbjct 1759290 TCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTT 1759231 Query 75774 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 | |||||||| || ||||||||||| ||||| ||||| || ||||| || |||| | Sbjct 1759230 CGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAA 1759171 Query 75834 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 75893 || ||| | | ||| | | | |||||| | ||| | || ||||||||| | Sbjct 1759170 GTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACA 1759111 Query 75894 GATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATC 75953 || || || || |||| | ||||| || | | || | || | ||| | Sbjct 1759110 AATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACC 1759051 Query 75954 CATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCAC 76013 | | ||| || || || | |||| |||||| || ||||||||||| ||||| || || | Sbjct 1759050 CTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGC 1758991 Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073 ||||||||| ||||||||||| | | || || ||| || || | |||||||||| Sbjct 1758990 CGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAG 1758931 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 | | | ||||| || ||||| || || |||||||| ||||| || | || || | Sbjct 1758930 GCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGT 1758871 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | | ||| || | || ||||| | ||| || ||||| | ||| || | ||| | Sbjct 1758870 GGCGCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGT 1758811 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------T 76246 | | ||| | | || ||||| | ||||| | ||| ||| || | Sbjct 1758810 TCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCC 1758751 Query 76247 TTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCA 76306 | ||| || |||| ||||| || | || || || || | ||||| ||||| | || Sbjct 1758750 TGTCC-GCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCG 1758692 Query 76307 TTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGA 76366 | | | | | | | ||| |||||||||| ||| || | | ||||||| || | | Sbjct 1758691 TCGGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAA 1758632 Query 76367 TTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTT 76426 |||||||||||||| || ||||||||| ||| || || || | | || || ||||| Sbjct 1758631 TTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTC 1758572 Query 76427 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTAT 76486 || | ||| || || ||||| ||| ||| | | ||| || | | | || Sbjct 1758571 TCCACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTA--ACTGTCTAACAT 1758514 Query 76487 CGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 || | || | || |||| | || || ||| || || || |||||| ||| Sbjct 1758513 AGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGG 1758454 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 | | || || | | | |||||||||| ||||| | | || | || ||||| Sbjct 1758453 CAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGC 1758394 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 ||| || | ||||| |||| | ||| | || | || || | || | | || | Sbjct 1758393 GCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCT 1758334 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || || || || || | | || || |||| |||||| | |||||| || || || | Sbjct 1758333 TCCCCGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGT 1758274 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | || || | | ||||||| ||| || || || || || | || | || | ||| | Sbjct 1758273 AAATAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGT 1758214 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGT 76814 || |||| | ||| | || | ||| |||| Sbjct 1758213 TAAAAACGCGCAAAACGGGCACAATCCCGT 1758184 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 |||| || | || ||||| || || || ||||| || || || || | ||| || |||| Sbjct 1757324 CGCTGAACTGCTTCTTTGTCTCTTTATGCAGATTGGAGACAGCAATCCGAGCTGCAAGAA 1757265 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 | ||||| ||||| || | |||||| | || || |||| || ||||||||||| | Sbjct 1757264 TAGCATAATCAGGGTGATTTGTAGTCATCATAGCGGCAGTTTCAGCAGCTAAAGTATCCA 1757205 Query 77457 ATTCTATAGTAGTAACTCC--GTTATATAGCCCTTGAATAACTTTCA 77501 |||| | || ||||| || | |||| |||| | ||||||||||| Sbjct 1757204 ATTCAACTGTGGTAACCCCCGGGTATA-AGCCACT-AATAACTTTCA 1757160 >seq5 Length=15459558 Score = 215 bits (238), Expect = 7e-51 Identities = 591/894 (66%), Gaps = 20/894 (2%) Strand=Plus/Minus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 ||||| | || |||||||| || || ||||| || ||||| || |||||||| Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010 Query 46390 GATATATTTTCCATAAAATCAAACGGATTA-GTAACATTATAAAtttttttAAATCCTAA 46448 || ||| | ||| ||||| |||||||| || | || || ||||| | | || || Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAA 2624951 Query 46449 TTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCAT 46508 || | || ||| || || || ||||| || || ||||| | || ||||| Sbjct 2624950 CTCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCAT 2624891 Query 46509 TCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC 46568 ||| || | |||| |||| ||| || || | || || | || || |||| || || Sbjct 2624890 TCCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTC 2624831 Query 46569 CGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA----TGCATCAAATGTTTAAACA 46624 || || | | | | | | || |||| | |||| ||| || |||| Sbjct 2624830 TTGGATAAT-GCTTTGAATCCGTTCT---TTGGACGGCTTCTGCACCAAGTGAGAGAACA 2624775 Query 46625 TTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATG 46684 | ||||| |||||||| ||||| ||||| || || || ||| | ||| || ||||||| Sbjct 2624774 TCAAACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATG 2624715 Query 46685 TGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAA 46743 |||| || ||||| || |||||||| ||||| || || | || |||| | ||||| Sbjct 2624714 TGAGACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGC-AAAGCTGCCAGAG 2624656 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT-- 46801 ||||| || ||||| || || || || || || | || || || || | || | | Sbjct 2624655 AAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTG 2624596 Query 46802 -TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860 | | |||||| ||||| || ||||| ||||| ||||| |||| || || || Sbjct 2624595 CTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATC 2624536 Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 ||||| || | || | || || | || || || || || || || | || Sbjct 2624535 GCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTG 2624476 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 ||||| || ||||| |||||||||||||| || || || |||||||| || | ||||| Sbjct 2624475 TACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCG 2624416 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACT 47039 || | || ||||| | || | || ||| | || || || || ||||| ||| Sbjct 2624415 GTCACTTGCACCTCCTGGCTGAACCTCTC-GACGAGGTTTTCGTTGACGATTCCGTCAGA 2624357 Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TT 47096 || || |||||||| | || || ||| || || |||||| | | ||||| || Sbjct 2624356 GGCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTT 2624297 Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156 |||||||| | | |||||| || | |||||||||||| | ||||| || || || || Sbjct 2624296 CTTCCAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTC 2624237 Query 47157 TGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 |||| || || | | ||| || || | || ||||| ||||| | ||||| Sbjct 2624236 CGCTTGCTTGTATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712915845882240