Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4 343 2e-89
seq5 215 7e-51
>seq4
Length=12290766
Score = 343 bits (380), Expect = 2e-89
Identities = 960/1470 (65%), Gaps = 15/1470 (1%)
Strand=Plus/Minus
Query 75357 TTATTTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGAT 75416
||| ||| | ||||||| ||||| ||||||||| | || ||||| || | || ||
Sbjct 1759650 TTAATTTGCTTTTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAAT 1759591
Query 75417 AGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGG 75476
||||||| || || |||| |||| | ||| ||||||||||||||| | |
Sbjct 1759590 AGTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCC 1759531
Query 75477 AATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTC 75536
|||| |||| | || ||||||||||||||||||||||| || || || || || ||||
Sbjct 1759530 CATAATTCGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTC 1759471
Query 75537 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 75596
||||||||||||| | ||||| || || | ||| ||||| | ||||| | | ||
Sbjct 1759470 TATCAGCCGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTT 1759411
Query 75597 GTTTGATATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTG 75653
|||| | ||| || |||| | | |||||||| || || || | |||||
Sbjct 1759410 GTTTCAAATCGTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCT 1759351
Query 75654 TATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 75713
|||||| ||| ||| | ||| | ||||| || ||| | | || || || |||
Sbjct 1759350 GATTCTTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGAT 1759291
Query 75714 TAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTT 75773
| || | |||||| || |||||||| || | | || |||||| || || ||||
Sbjct 1759290 TCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTT 1759231
Query 75774 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833
| |||||||| || ||||||||||| ||||| ||||| || ||||| || |||| |
Sbjct 1759230 CGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAA 1759171
Query 75834 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 75893
|| ||| | | ||| | | | |||||| | ||| | || ||||||||| |
Sbjct 1759170 GTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACA 1759111
Query 75894 GATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATC 75953
|| || || || |||| | ||||| || | | || | || | ||| |
Sbjct 1759110 AATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACC 1759051
Query 75954 CATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCAC 76013
| | ||| || || || | |||| |||||| || ||||||||||| ||||| || || |
Sbjct 1759050 CTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGC 1758991
Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073
||||||||| ||||||||||| | | || || ||| || || | ||||||||||
Sbjct 1758990 CGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAG 1758931
Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133
| | | ||||| || ||||| || || |||||||| ||||| || | || || |
Sbjct 1758930 GCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGT 1758871
Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193
| | | ||| || | || ||||| | ||| || ||||| | ||| || | ||| |
Sbjct 1758870 GGCGCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGT 1758811
Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------T 76246
| | ||| | | || ||||| | ||||| | ||| ||| || |
Sbjct 1758810 TCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCC 1758751
Query 76247 TTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCA 76306
| ||| || |||| ||||| || | || || || || | ||||| ||||| | ||
Sbjct 1758750 TGTCC-GCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCG 1758692
Query 76307 TTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGA 76366
| | | | | | | ||| |||||||||| ||| || | | ||||||| || | |
Sbjct 1758691 TCGGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAA 1758632
Query 76367 TTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTT 76426
|||||||||||||| || ||||||||| ||| || || || | | || || |||||
Sbjct 1758631 TTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTC 1758572
Query 76427 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTAT 76486
|| | ||| || || ||||| ||| ||| | | ||| || | | | ||
Sbjct 1758571 TCCACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTA--ACTGTCTAACAT 1758514
Query 76487 CGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544
|| | || | || |||| | || || ||| || || || |||||| |||
Sbjct 1758513 AGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGG 1758454
Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604
| | || || | | | |||||||||| ||||| | | || | || |||||
Sbjct 1758453 CAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGC 1758394
Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664
||| || | ||||| |||| | ||| | || | || || | || | | || |
Sbjct 1758393 GCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCT 1758334
Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724
| || || || || || | | || || |||| |||||| | |||||| || || || |
Sbjct 1758333 TCCCCGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGT 1758274
Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784
| || || | | ||||||| ||| || || || || || | || | || | ||| |
Sbjct 1758273 AAATAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGT 1758214
Query 76785 TATAAACTCTCAACATTGGAATAATGCCGT 76814
|| |||| | ||| | || | ||| ||||
Sbjct 1758213 TAAAAACGCGCAAAACGGGCACAATCCCGT 1758184
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/167 (72%), Gaps = 4/167 (2%)
Strand=Plus/Minus
Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396
|||| || | || ||||| || || || ||||| || || || || | ||| || ||||
Sbjct 1757324 CGCTGAACTGCTTCTTTGTCTCTTTATGCAGATTGGAGACAGCAATCCGAGCTGCAAGAA 1757265
Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456
| ||||| ||||| || | |||||| | || || |||| || ||||||||||| |
Sbjct 1757264 TAGCATAATCAGGGTGATTTGTAGTCATCATAGCGGCAGTTTCAGCAGCTAAAGTATCCA 1757205
Query 77457 ATTCTATAGTAGTAACTCC--GTTATATAGCCCTTGAATAACTTTCA 77501
|||| | || ||||| || | |||| |||| | |||||||||||
Sbjct 1757204 ATTCAACTGTGGTAACCCCCGGGTATA-AGCCACT-AATAACTTTCA 1757160
>seq5
Length=15459558
Score = 215 bits (238), Expect = 7e-51
Identities = 591/894 (66%), Gaps = 20/894 (2%)
Strand=Plus/Minus
Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389
||||| | || |||||||| || || ||||| || ||||| || ||||||||
Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010
Query 46390 GATATATTTTCCATAAAATCAAACGGATTA-GTAACATTATAAAtttttttAAATCCTAA 46448
|| ||| | ||| ||||| |||||||| || | || || ||||| | | || ||
Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAA 2624951
Query 46449 TTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCAT 46508
|| | || ||| || || || ||||| || || ||||| | || |||||
Sbjct 2624950 CTCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCAT 2624891
Query 46509 TCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC 46568
||| || | |||| |||| ||| || || | || || | || || |||| || ||
Sbjct 2624890 TCCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTC 2624831
Query 46569 CGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA----TGCATCAAATGTTTAAACA 46624
|| || | | | | | | || |||| | |||| ||| || ||||
Sbjct 2624830 TTGGATAAT-GCTTTGAATCCGTTCT---TTGGACGGCTTCTGCACCAAGTGAGAGAACA 2624775
Query 46625 TTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATG 46684
| ||||| |||||||| ||||| ||||| || || || ||| | ||| || |||||||
Sbjct 2624774 TCAAACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATG 2624715
Query 46685 TGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAA 46743
|||| || ||||| || |||||||| ||||| || || | || |||| | |||||
Sbjct 2624714 TGAGACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGC-AAAGCTGCCAGAG 2624656
Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT-- 46801
||||| || ||||| || || || || || || | || || || || | || | |
Sbjct 2624655 AAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTG 2624596
Query 46802 -TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860
| | |||||| ||||| || ||||| ||||| ||||| |||| || || ||
Sbjct 2624595 CTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATC 2624536
Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920
||||| || | || | || || | || || || || || || || | ||
Sbjct 2624535 GCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTG 2624476
Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980
||||| || ||||| |||||||||||||| || || || |||||||| || | |||||
Sbjct 2624475 TACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCG 2624416
Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACT 47039
|| | || ||||| | || | || ||| | || || || || ||||| |||
Sbjct 2624415 GTCACTTGCACCTCCTGGCTGAACCTCTC-GACGAGGTTTTCGTTGACGATTCCGTCAGA 2624357
Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TT 47096
|| || |||||||| | || || ||| || || |||||| | | ||||| ||
Sbjct 2624356 GGCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTT 2624297
Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156
|||||||| | | |||||| || | |||||||||||| | ||||| || || || ||
Sbjct 2624296 CTTCCAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTC 2624237
Query 47157 TGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210
|||| || || | | ||| || || | || ||||| ||||| | |||||
Sbjct 2624236 CGCTTGCTTGTATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712915845882240
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