Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 2e-23
seq7 120 7e-22
seq2 113 1e-19
>seq4
Length=12290766
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
|||||| || || || || |||||||||||||||| ||||| | ||||| || ||
Sbjct 488962 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTG 489021
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||| || || || || | | ||| || || | | || |||||||| || ||||||||
Sbjct 489022 TTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTTT 489081
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
||||||| | || | | |||||||| ||| || |||||||| || || ||||| ||
Sbjct 489082 CGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGT 489141
Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104
||||| |||||||| | |||||
Sbjct 489142 CAGAGTTTTCACGAAAATTTGCAT 489165
>seq7
Length=16482863
Score = 120 bits (132), Expect = 7e-22
Identities = 152/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || || || || |||||||||||||| | | || | |||||||||||
Sbjct 10793864 CAAG-TGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTCTA 10793922
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||||||||| ||||| | || || ||||| | | ||| |||||||| || ||||
Sbjct 10793923 GTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGAA 10793982
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||||| | || | |||| ||| || ||||| | |||||| ||||| |
Sbjct 10793983 TCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTTCC 10794042
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | ||||| ||||||| ||||||
Sbjct 10794043 CAGTCAAGGTCTTGACGAAGATCTGCAT 10794070
Score = 105 bits (116), Expect = 2e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
|| || || || |||||||| |||||||| |||| | ||||| |||||||| || |
Sbjct 10793184 TGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGT 10793243
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| ||||||||||| | ||||||||| || | | || || || || || ||||||||
Sbjct 10793244 TTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTTC 10793303
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
|| || | || | |||| || |||||||| | ||| || || || || ||
Sbjct 10793304 GCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGTC 10793363
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
| |||||| ||||||| |||||
Sbjct 10793364 AAAGTCTTTACGAAGATTTGCAT 10793386
Score = 104 bits (114), Expect = 5e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| ||||||||||| || || |||||||| ||||| || | | || | ||||||||
Sbjct 10792493 GACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTC 10792552
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||| || || ||||| | || |||||||| | | || |||||||| |||||
Sbjct 10792553 CAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATCTTG 10792612
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|||||| || ||| | || | |||| || ||| ||||| | ||||| |||||
Sbjct 10792613 AATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAACGTAATTGTTTT 10792672
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || | ||||||||||| | |||||
Sbjct 10792673 CCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 102 bits (112), Expect = 2e-16
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || || || || |||||||||||||||| || || | || ||||| |
Sbjct 10794092 CAAG-TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCGA 10794150
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || ||||| || | | ||| || || | | ||| || ||||| || || |
Sbjct 10794151 GTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGA 10794210
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| |||| | | || || ||| ||||| ||||| || || ||||
Sbjct 10794211 TCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGTCTTGC 10794270
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| ||||| ||||||| |||||
Sbjct 10794271 CAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 98.7 bits (108), Expect = 2e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
||| || || || |||||||| || || || || | | || | ||||||||| ||
Sbjct 10792727 ATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTG 10792786
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||| || || ||||| | ||||||||| || | | || ||||| || || || |||||
Sbjct 10792787 TTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGATTTT 10792846
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
||| ||| |||| | ||||||| |||||||| | ||| || || || |||||
Sbjct 10792847 AGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGT 10792906
Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104
| ||||||||||| | |||||
Sbjct 10792907 CAAGGTCTTCACGAAAATTTGCAT 10792930
Score = 96.9 bits (106), Expect = 8e-15
Identities = 147/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || || || || ||||||||||| || | ||||| | || ||||| |
Sbjct 10794320 CAAG-TGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCGA 10794378
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || |||||||| | | |||||||| | | ||| |||||||| || || |
Sbjct 10794379 GTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGA 10794438
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | | || || ||| || || | || || ||||| |
Sbjct 10794439 TCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTTTTAC 10794498
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||||||||||| ||||||
Sbjct 10794499 CAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || |||||||| ||||||||||| |||| | || | ||||| || |
Sbjct 10793408 CAAG-TGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCCTCCA 10793466
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
||| |||||||| || | || ||||| || | | || || || || || ||||
Sbjct 10793467 ACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGAA 10793526
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
|||| || || | || | |||| ||| || ||||||||||| || ||||| |
Sbjct 10793527 TTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTTTTTC 10793586
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||||||||| | |||||
Sbjct 10793587 CAGTCAAAGTCTTCACGAAAATTTGCAT 10793614
Score = 87.8 bits (96), Expect = 4e-12
Identities = 145/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || || ||||||||||| ||||| |||| | ||| | || ||||| |
Sbjct 10793636 CAAG-TGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTCTTCAA 10793694
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || |||||||| | || || ||||| | | ||| |||||||| ||||| |
Sbjct 10793695 GTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGA 10793754
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| |||| | | | || ||| || || || | || || || ||||
Sbjct 10793755 TCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGC 10793814
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || || || ||||| | |||||
Sbjct 10793815 CAGTCAGGGTTTTGACGAAAATTTGCAT 10793842
>seq2
Length=15265516
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
|||||||| | || || ||||| || || || || ||||| |||||||||| | ||
Sbjct 12970345 CTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTA 12970286
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||| || || ||||||||||||||| || | ||||| |||| | || ||
Sbjct 12970285 CGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCC 12970226
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
|| || || ||||| || ||| ||| |||| | | ||||| ||| || |||||
Sbjct 12970225 TCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGG 12970166
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || || ||||| || || || || ||||| | |||||||
Sbjct 12970165 GTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATT 12970124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153790021109022
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