Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 seq4 113 4e-20 >seq7 Length=16482863 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || || ||||| || || || || || ||||| |||||| Sbjct 10792930 ATGCAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTCA 10792871 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| ||||| || ||||||||| |||| ||||| Sbjct 10792870 GACACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 10792811 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | || | ||| ||||||||| | |||||| || || | || |||||| Sbjct 10792810 CAGAGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTCGGACTATAAT 10792751 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || ||||||||||| ||||||||||| || || Sbjct 10792750 ATTCAAAAAGAATCAACCCTACATTTAGTATTGCGTCTGCGAGGAGG 10792704 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| |||| ||||||||||| ||| ||||| ||||| Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || ||| |||||||| || | || || ||| Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 10793039 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | || | ||| || |||||| | ||||| ||| | ||||||| ||| Sbjct 10793038 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAAT 10792979 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || ||||| || || || || ||||||||||| || ||||||| Sbjct 10792978 ATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGAGGTGGCA 10792930 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || |||||||| || ||||| ||||| ||||| || || Sbjct 10792702 ATGCAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCG 10792643 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||||| || || ||||| ||||| || || Sbjct 10792642 GACACGATTGAAAATGTGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAG 10792583 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||||| | || | |||||| ||||| ||||||||| || | ||| | | || || | Sbjct 10792582 CAAAGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTT--CGGACTACA 10792525 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||||| ||||| || || ||| |||| || ||||| ||||| || Sbjct 10792524 ATATCCAAAAGGAATCCACTCTTCATCTAGTCTTACGTCTTCGCGGAGG 10792476 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || || || ||||| || || || || || ||||| ||||| Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | || || |||||| |||||||| || ||||| ||||| Sbjct 10793326 GACACTATCGAAAACGTTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793267 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | || | || |||||||| | |||||| |||| | |||| || || Sbjct 10793266 CAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAAC 10793207 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||||||||| ||||| || ||||| ||||| || || ||||||| Sbjct 10793206 ATTCAAAAAGAATCAACACTCCACTTAGTATTGCGGCTCCGAGGTGGCA 10793158 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| |||| ||||| ||||| ||| |||| ||||| Sbjct 10793842 ATGCAAATTTTCGTCAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCT 10793783 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || || ||||| ||||| | || || ||| Sbjct 10793782 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 10793723 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | || | || || |||||| | ||||| ||| | |||| || ||| Sbjct 10793722 CAAAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACTCTTTCCGACTACAAT 10793663 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||||||||| || || || || ||||||||||| || ||||||| Sbjct 10793662 ATCCAAAAAGAATCCACCCTCCACTTGGTGTTGCGTCTCCGAGGTGGCA 10793614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || || ||||| || ||||| || || | ||| ||||| Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || || |||||| |||||||| || ||||| ||||| Sbjct 10793554 GACACAATCGAAAACGTGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793495 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||||| | |||| || |||||||| ||||| ||| || | ||| | |||| || | Sbjct 10793494 CAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCT--CCGACTACA 10793437 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 | || || ||||| || || || || || ||||||||||| || ||||||| Sbjct 10793436 ACATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCGTCTCCGTGGTGGCA 10793386 >seq4 Length=12290766 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| |||||||||| ||||| || | || || || Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || ||| |||||| ||||| |||||| ||||| ||||||| Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| |||||| ||||| |||| ||| ||| || ||||||| || Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || |||||||| ||||||||||| ||||| Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421800496804432