Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq7 116 3e-21
seq4 113 4e-20
>seq7
Length=16482863
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || || || ||||| || || || || || ||||| ||||||
Sbjct 10792930 ATGCAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTCA 10792871
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | ||| | || ||| ||||| || ||||||||| |||| |||||
Sbjct 10792870 GACACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 10792811
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| ||| | || | ||| ||||||||| | |||||| || || | || ||||||
Sbjct 10792810 CAGAGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTCGGACTATAAT 10792751
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||||||||| || ||||||||||| ||||||||||| || ||
Sbjct 10792750 ATTCAAAAAGAATCAACCCTACATTTAGTATTGCGTCTGCGAGGAGG 10792704
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || ||||| |||| ||||||||||| ||| ||||| |||||
Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || || || ||| |||||||| || | || || |||
Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 10793039
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||||| | || | ||| || |||||| | ||||| ||| | ||||||| |||
Sbjct 10793038 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAAT 10792979
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| || || ||||| || || || || ||||||||||| || |||||||
Sbjct 10792978 ATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGAGGTGGCA 10792930
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || || |||||||| || ||||| ||||| ||||| || ||
Sbjct 10792702 ATGCAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCG 10792643
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | ||| | || || |||||| || || ||||| ||||| || ||
Sbjct 10792642 GACACGATTGAAAATGTGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAG 10792583
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277
||||| | || | |||||| ||||| ||||||||| || | ||| | | || || |
Sbjct 10792582 CAAAGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTT--CGGACTACA 10792525
Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|||| ||||| ||||| || || ||| |||| || ||||| ||||| ||
Sbjct 10792524 ATATCCAAAAGGAATCCACTCTTCATCTAGTCTTACGTCTTCGCGGAGG 10792476
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| || || || || ||||| || || || || || ||||| |||||
Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| || | | | || || |||||| |||||||| || ||||| |||||
Sbjct 10793326 GACACTATCGAAAACGTTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793267
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| ||| | || | || |||||||| | |||||| |||| | |||| || ||
Sbjct 10793266 CAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAAC 10793207
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| ||||||||||| ||||| || ||||| ||||| || || |||||||
Sbjct 10793206 ATTCAAAAAGAATCAACACTCCACTTAGTATTGCGGCTCCGAGGTGGCA 10793158
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| |||||||| |||| ||||| ||||| ||| |||| |||||
Sbjct 10793842 ATGCAAATTTTCGTCAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCT 10793783
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || || || || ||||| ||||| | || || |||
Sbjct 10793782 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 10793723
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||||| | || | || || |||||| | ||||| ||| | |||| || |||
Sbjct 10793722 CAAAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACTCTTTCCGACTACAAT 10793663
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| ||||||||||| || || || || ||||||||||| || |||||||
Sbjct 10793662 ATCCAAAAAGAATCCACCCTCCACTTGGTGTTGCGTCTCCGAGGTGGCA 10793614
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || || || ||||| || ||||| || || | ||| |||||
Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | | | | || || |||||| |||||||| || ||||| |||||
Sbjct 10793554 GACACAATCGAAAACGTGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793495
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277
||||| | |||| || |||||||| ||||| ||| || | ||| | |||| || |
Sbjct 10793494 CAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCT--CCGACTACA 10793437
Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
| || || ||||| || || || || || ||||||||||| || |||||||
Sbjct 10793436 ACATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCGTCTCCGTGGTGGCA 10793386
>seq4
Length=12290766
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || ||||| |||||||||| ||||| || | || || ||
Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | | | | || ||| |||||| ||||| |||||| ||||| |||||||
Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| | | |||| |||||| ||||| |||| ||| ||| || ||||||| ||
Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || || ||||| || || |||||||| ||||||||||| |||||
Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421800496804432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |