Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5 138 1e-27 seq10 84.2 2e-11 >seq5 Length=15459558 Score = 138 bits (152), Expect = 1e-27 Identities = 354/534 (66%), Gaps = 5/534 (1%) Strand=Plus/Minus Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 |||| ||||| |||||||| ||||||||||| || ||||| ||||| |||||| ||| Sbjct 2624778 AACATCAAACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAA 2624719 Query 23560 AATGTTAATCCTGGCATTA-ATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCC 23618 ||||| | |||||||| | || | || ||||||| ||| || || | |||||| || Sbjct 2624718 AATGTGAGACCTGGCATAAGATTC-CGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCC 2624660 Query 23619 GGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 || |||||||| || || || || ||||| ||||| | ||| ||||| || || || Sbjct 2624659 AGAGAAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTT 2624600 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC 23738 | ||||| | ||| | |||||| || ||||| | || || Sbjct 2624599 CTTGCTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTC 2624540 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 || || || || | || || || | || | || || || || || | | Sbjct 2624539 GATCGCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACAT 2624480 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 || ||||| || ||||| || ||||||||||| || || ||||| ||||| || | ||| Sbjct 2624479 GCTGTACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGC 2624420 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 ||| | || ||| || || | || || | | | |||||||| || || || || Sbjct 2624419 TTCGGTCACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTC 2624360 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAG--TTGA-TAA 23975 | || || || || |||||||| | || || | | |||||||| || | | Sbjct 2624359 AGAGGCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTT 2624300 Query 23976 TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 || ||||| || | | |||||| || ||||| ||||| || |||||||| Sbjct 2624299 GTTCTTCCAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAA 2624246 >seq10 Length=7222678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 ||||| || ||||||||| |||||| |||||| | || ||||| ||||||||||||||| Sbjct 6976716 CATACGAAGTTTTGGATTATTGATAGGAAACATGTGTACATTGGGAGTGCTAACATGGAC 6976775 Query 139498 TGGCGATCACTAACTCAAGTA 139518 ||| | | || ||||||||| Sbjct 6976776 TGGAGGGCTCTGACTCAAGTA 6976796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521474428274800