Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 1e-27
seq10 84.2 2e-11
>seq5
Length=15459558
Score = 138 bits (152), Expect = 1e-27
Identities = 354/534 (66%), Gaps = 5/534 (1%)
Strand=Plus/Minus
Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559
|||| ||||| |||||||| ||||||||||| || ||||| ||||| |||||| |||
Sbjct 2624778 AACATCAAACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAA 2624719
Query 23560 AATGTTAATCCTGGCATTA-ATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCC 23618
||||| | |||||||| | || | || ||||||| ||| || || | |||||| ||
Sbjct 2624718 AATGTGAGACCTGGCATAAGATTC-CGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCC 2624660
Query 23619 GGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678
|| |||||||| || || || || ||||| ||||| | ||| ||||| || || ||
Sbjct 2624659 AGAGAAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTT 2624600
Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC 23738
| ||||| | ||| | |||||| || ||||| | || ||
Sbjct 2624599 CTTGCTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTC 2624540
Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798
|| || || || | || || || | || | || || || || || | |
Sbjct 2624539 GATCGCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACAT 2624480
Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858
|| ||||| || ||||| || ||||||||||| || || ||||| ||||| || | |||
Sbjct 2624479 GCTGTACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGC 2624420
Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918
||| | || ||| || || | || || | | | |||||||| || || || ||
Sbjct 2624419 TTCGGTCACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTC 2624360
Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAG--TTGA-TAA 23975
| || || || || |||||||| | || || | | |||||||| || | |
Sbjct 2624359 AGAGGCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTT 2624300
Query 23976 TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029
|| ||||| || | | |||||| || ||||| ||||| || ||||||||
Sbjct 2624299 GTTCTTCCAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAA 2624246
>seq10
Length=7222678
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497
||||| || ||||||||| |||||| |||||| | || ||||| |||||||||||||||
Sbjct 6976716 CATACGAAGTTTTGGATTATTGATAGGAAACATGTGTACATTGGGAGTGCTAACATGGAC 6976775
Query 139498 TGGCGATCACTAACTCAAGTA 139518
||| | | || |||||||||
Sbjct 6976776 TGGAGGGCTCTGACTCAAGTA 6976796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521474428274800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |