Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq7 140 2e-28
seq4 118 8e-22
>seq7
Length=16482863
Score = 140 bits (154), Expect = 2e-28
Identities = 174/233 (75%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || ||||| | ||| |||| |||||| ||| ||||| ||||||||||||||
Sbjct 10794068 CATGCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATC 10794127
Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
|| | || | ||| |||| || || || || || || || ||||||||||| |||||||
Sbjct 10794128 GGACAAGGT-GCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTG 10794186
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284
||| | || ||||| ||| ||||| |||| | |||| | || || || | ||
Sbjct 10794187 GAGGGATGCCCTCCTTGTCCTGGATCTT-GGCTTTGACGTTCTCGATCGTATCAGAGGGC 10794245
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||| || || ||||| || ||||| ||||| ||||||||||||||
Sbjct 10794246 TCAACTTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 136 bits (150), Expect = 3e-27
Identities = 171/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| | ||| |||| |||||| ||| ||||| |||||||||||
Sbjct 10793837 TTGCATGCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTA 10793896
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
||| | ||| ||| | || || || || ||||||||||||||||| | || || ||
Sbjct 10793897 ATCTGAGAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTC 10793956
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | |||||||| ||| ||||| ||| | || | || ||||||| |
Sbjct 10793957 TGGTGGGATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGG 10794016
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||| || |||| ||||| || || || || | |||||| |||||||| ||||||
Sbjct 10794017 TTCGACTTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCATG 10794071
Score = 129 bits (142), Expect = 4e-25
Identities = 171/235 (73%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || |||| |||||| |||| ||| ||||| ||||| |||||||||||
Sbjct 10794293 TTGCATACCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTA 10794352
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | | ||| |||| || || || || || || ||||||||||| ||||| ||
Sbjct 10794353 GTCAGACAAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTC 10794412
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGG 44282
|| || | ||||||||| ||| ||||| |||| | | || | ||||| |||| ||
Sbjct 10794413 TGGGGGGATACCTTCCTTGTCCTGGATCTT-AGCTTTGACGTTTTCGATGGTATCGGAGG 10794471
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||| || || || || || || | |||||||||||||| |||||
Sbjct 10794472 GCTCGACCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 122 bits (134), Expect = 6e-23
Identities = 170/236 (72%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| ||| | ||| || | || || || || ||||| || || ||
Sbjct 10792697 TTGCATACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATA 10792756
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | || |||| | || || || || || || ||||||||||| | |||||||||
Sbjct 10792757 GTCCGACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATC 10792816
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282
|| ||| | ||||| || ||| || || |||| || ||| | || ||||| | ||
Sbjct 10792817 TGGAGGAATGCCTTCTTTATCCTGGATTTTA-GCTTTAACATTCTCAATTGTGTCTGAGG 10792875
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||| || |||| || |||||||||||||| | |||||||||||| |||||||||
Sbjct 10792876 GTTCTACTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Score = 118 bits (130), Expect = 8e-22
Identities = 167/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | |||||||| ||| || || ||| || |||||||||||
Sbjct 10793381 TTGCATGCCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTA 10793440
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| |||| ||| | || |||| ||| || ||||| || ||||| | ||||||||
Sbjct 10793441 GTCGGAGAGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATC 10793500
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | || || || ||| || ||| ||||| || | || ||||| | |
Sbjct 10793501 TGGGGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGG 10793560
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||| || || | || ||||| ||||| || | ||||||||||| |||||||||
Sbjct 10793561 TTCGACTTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615
Score = 109 bits (120), Expect = 4e-19
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| || | ||| || | ||| || || || ||||| ||||||||
Sbjct 10793153 TTGCATGCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTA 10793212
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| ||| || | || || ||||| || ||||| |||||||| | |||||||||
Sbjct 10793213 GTCGGAGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATC 10793272
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | || || || ||| || ||| ||| | || | || ||||| | |
Sbjct 10793273 TGGGGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGG 10793332
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||| || |||| || |||||||| || || | ||||| |||||||||||||||
Sbjct 10793333 TTCTACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185
|| || || ||||| ||| ||||||||||| ||||| || | ||| ||| | ||
Sbjct 10792491 AAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCT 10792550
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| ||| || || ||||||||||| | ||||| |||| || | ||||||||| ||
Sbjct 10792551 TCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATCT 10792610
Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
|| || ||||| || | || ||||| | | || || |||| |||||| ||
Sbjct 10792611 TGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAACGTAATTGTT 10792670
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || | ||||||||||| ||||||||
Sbjct 10792671 TTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 89.7 bits (98), Expect = 4e-13
Identities = 163/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| || | |||||||| ||| || ||| ||||| ||||| |||||
Sbjct 10792925 TTGCATGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTA 10792984
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
||||| || || |||| || || || || || ||||||||||| | || || ||
Sbjct 10792985 ATCGGAAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTC 10793044
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282
|| || | ||| || || || ||||| || | | |||| | || || || | |
Sbjct 10793045 TGGTGGGATACCCTCTTTGTCTTGAATCTT-AGCCTTGACGTTCTCAATTGTATCAGAAG 10793103
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||| || |||| || || || || || || || || || ||||| |||||||||
Sbjct 10793104 GTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159
>seq4
Length=12290766
Score = 118 bits (130), Expect = 8e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || |||| ||| | ||| || | ||||| ||| ||||| |||||||||||||||
Sbjct 488936 ATCCCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCG 488995
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| | ||| | || |||||||| || || ||||| ||||||||||| ||||| |
Sbjct 488996 GACAAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGG 489055
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | |||||||| ||| || ||| || | || | |||||||| | | ||
Sbjct 489056 GGAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCG 489115
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | || || ||||| || || || || |||||||| ||||||||
Sbjct 489116 ACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359981265468594
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |