Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2 183 7e-41
seq7 163 7e-35
seq4 158 3e-33
>seq2
Length=15265516
Score = 183 bits (202), Expect = 7e-41
Identities = 172/219 (79%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| ||||| || || || || || |||||||| ||||| || |||||
Sbjct 12970128 CAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTCAGAT 12970187
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || ||| ||||||||||| ||||| || || || ||||| ||||||
Sbjct 12970188 ACTATCGAGAATGTGAAAGCTAAGATTCAGGATAAAGAGGGGATTCCCCCGGATCAGCAA 12970247
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| ||||||||||| |||||| | || || ||||||| || ||
Sbjct 12970248 CGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCCGATTACAATATC 12970307
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || ||||| || || || || ||||| |||||||||
Sbjct 12970308 CAGAAGGAATCCACCCTTCACCTAGTTTTAAGACTCAGA 12970346
>seq7
Length=16482863
Score = 163 bits (180), Expect = 7e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||| | || || ||||| |||||| | ||||| || ||| ||
Sbjct 10794523 CAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCCGAT 10794464
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||||||| ||||| |||||||| ||||| ||||| || |||||||||
Sbjct 10794463 ACCATCGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAGCAA 10794404
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || ||||| |||||||| ||| | ||| | | || || ||| ||
Sbjct 10794403 CGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTACAACATC 10794344
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136
|| || ||||| || || || | |||||||||
Sbjct 10794343 CAGAAGGAATCGACGCTCCACTTGGTTTTGAGA 10794311
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| |||||||| || || ||||| |||||||| || || ||| || ||
Sbjct 10793155 CAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCTGAT 10793096
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||||||||| |||||||| |||||||| || ||||| || ||||| |||
Sbjct 10793095 ACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAACAA 10793036
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || |||||||| || ||||| || | |||||| ||||||| || ||
Sbjct 10793035 AGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAATATC 10792976
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || ||||| || || || | || ||| | ||| ||
Sbjct 10792975 CAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGA 10792937
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||| | || || || |||||||| | || || ||| || |||
Sbjct 10793383 CAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCGGAC 10793324
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || || |||||||||||||| || || || || || |||||
Sbjct 10793323 ACTATCGAAAACGTTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAGCAG 10793264
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||||||||| ||||||||||||||||| | ||||| |||| || ||| |
Sbjct 10793263 AGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAACATT 10793204
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||||||||| || | || ||| | ||| ||
Sbjct 10793203 CAAAAAGAATCAACACTCCACTTAGTATTGCGGCTCCGA 10793165
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| || || || || || |||||| | ||||| ||| || ||
Sbjct 10793839 CAAATTTTCGTCAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCTGAT 10793780
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| || ||||| ||||| ||||| || ||||| |||
Sbjct 10793779 ACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAACAA 10793720
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| |||||||| || ||||| || | |||||| |||| || || ||
Sbjct 10793719 AGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACTCTTTCCGACTACAATATC 10793660
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| || || || | || ||| | ||| ||
Sbjct 10793659 CAAAAAGAATCCACCCTCCACTTGGTGTTGCGTCTCCGA 10793621
Score = 147 bits (162), Expect = 5e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| ||| | || |||||||||||||| || || || ||| || |||
Sbjct 10793611 CAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCGGAC 10793552
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || || |||||||||||||| || || || || || ||||||
Sbjct 10793551 ACAATCGAAAACGTGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAGCAA 10793492
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || |||||||| |||||| | || ||||| | || || |||| || ||| ||
Sbjct 10793491 AGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAACATC 10793432
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
|| ||||| || || || || | || ||| | |||
Sbjct 10793431 CAGAAAGAGTCGACCCTCCACTTGGTGTTGCGTCTC 10793396
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || | || ||||| |||||||| | || || ||| |||||||
Sbjct 10792927 CAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTCAGAC 10792868
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| |||||||| || ||||| || |||||
Sbjct 10792867 ACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAGCAG 10792808
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| || || ||||| ||||||||||| | || || | || ||||| |
Sbjct 10792807 AGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTCGGACTATAATATT 10792748
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|||||||||||||| || ||| | || |||
Sbjct 10792747 CAAAAAGAATCAACCCTACATTTAGTATTG 10792718
Score = 145 bits (160), Expect = 2e-29
Identities = 165/219 (75%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || ||||| || || || || ||| ||
Sbjct 10794295 CAAATCTTCGTTAAGACACTCACTGGCAAGACCATCACTCTGGAAGTTGAGCCCTCTGAT 10794236
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||||||| ||||| |||||||| || || |||||||| || || ||
Sbjct 10794235 ACGATCGAGAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAACAG 10794176
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | || ||||| || ||||| |||||||| ||| | || |||| ||||||| ||| |
Sbjct 10794175 CGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCAC-CTTGTCCGATTACAACAT 10794117
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
||| || ||||| || || || | |||||| | || ||
Sbjct 10794116 CCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAG 10794078
Score = 118 bits (130), Expect = 3e-21
Identities = 150/205 (73%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || ||||| || || | || || ||| || |||
Sbjct 10794067 CAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCCGAC 10794008
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| ||||||||||| || ||||| ||||| || ||||| |||
Sbjct 10794007 ACGATTGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCAACAA 10793948
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||| ||||| || |||||||| | || || | ||||| ||| ||
Sbjct 10793947 AGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAACATC 10793888
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || ||||| || || || ||||
Sbjct 10793887 CAGAAGGAATCCACCCTTCA-CTTG 10793864
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || | || || ||||| || || | || || || || |||
Sbjct 10792699 CAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCGGAC 10792640
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || || ||||| || || ||||| || || || |||||||||
Sbjct 10792639 ACGATTGAAAATGTGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAGCAA 10792580
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || ||||||||| | |||||||| | || ||| | || || || ||
Sbjct 10792579 AGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTTCGGACTACAATATC 10792520
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132
||||| ||||| || || ||||| || ||
Sbjct 10792519 CAAAAGGAATCCACTCTTCATCTAGTCTT 10792491
>seq4
Length=12290766
Score = 158 bits (174), Expect = 3e-33
Identities = 161/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||||||||| || || || || ||||| || ||||| || ||||||
Sbjct 489162 CAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCAGAC 489103
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || |||||| || ||||||||||| ||||| || || || || || ||
Sbjct 489102 ACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAACAG 489043
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || || |||||||| || |||||| | ||| | ||||||| ||| ||
Sbjct 489042 CGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAACATC 488983
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || ||||| || || ||| | ||||||
Sbjct 488982 CAGAAGGAATCCACCCTTCATTTAGTTTTG 488953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203699089717908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |