Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7 111 1e-19 seq2 105 6e-18 >seq7 Length=16482863 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || || |||||||| ||||||||||| || || | || |||||||| ||||||||||| Sbjct 10793196 TCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAG 10793255 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||| || || | ||||| | ||| |||||| ||| |||| || | |||| Sbjct 10793256 ATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCC-TGAATTTTCGCCTTAACGTT 10793314 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||| | || || |||| || ||||| || || |||| |||||||| Sbjct 10793315 TTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTAC 10793374 Query 41851 GAAAATCTGCATG 41863 ||| || |||||| Sbjct 10793375 GAAGATTTGCATG 10793387 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||||| || || || ||| ||||| ||||| |||||||| Sbjct 10793387 GCCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGA 10793446 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || | ||| ||||||||||| |||| | || || || | ||| Sbjct 10793447 GAGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGG 10793506 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||| |||||| ||| |||| || | ||| | | ||||| | || | Sbjct 10793507 AATCCCCTCTTTGTCC-TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGA 10793565 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || |||||||| || |||| ||||| |||||||| |||||| Sbjct 10793566 CTTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615 >seq2 Length=15265516 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || | || | ||| || || || || ||| |||||||| || || || |||| Sbjct 12970353 CGCCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGG 12970294 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||| || | || |||||||| || |||||||| || || || || || |||| || Sbjct 12970293 AGAGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGG 12970234 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCC 41812 ||| | ||| || ||| ||| | || || |||| | | ||| || || ||| Sbjct 12970233 GAATCCCCTCTTTATCC-TGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCG 12970175 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || ||||| || || |||||||||||||| Sbjct 12970174 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462291968538400