Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq7 111 1e-19
seq2 105 6e-18
>seq7
Length=16482863
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|| || |||||||| ||||||||||| || || | || |||||||| |||||||||||
Sbjct 10793196 TCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAG 10793255
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
|||| | ||| || || | ||||| | ||| |||||| ||| |||| || | ||||
Sbjct 10793256 ATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCC-TGAATTTTCGCCTTAACGTT 10793314
Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
| | |||||| | || || |||| || ||||| || || |||| ||||||||
Sbjct 10793315 TTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTAC 10793374
Query 41851 GAAAATCTGCATG 41863
||| || ||||||
Sbjct 10793375 GAAGATTTGCATG 10793387
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| ||||||| || || || ||| ||||| ||||| ||||||||
Sbjct 10793387 GCCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGA 10793446
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| | || || | ||| ||||||||||| |||| | || || || | |||
Sbjct 10793447 GAGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGG 10793506
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| | ||| |||||| ||| |||| || | ||| | | ||||| | || |
Sbjct 10793507 AATCCCCTCTTTGTCC-TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGA 10793565
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| || | || |||||||| || |||| ||||| |||||||| ||||||
Sbjct 10793566 CTTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615
>seq2
Length=15265516
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || | || | ||| || || || || ||| |||||||| || || || ||||
Sbjct 12970353 CGCCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGG 12970294
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
||||||| || | || |||||||| || |||||||| || || || || || |||| ||
Sbjct 12970293 AGAGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGG 12970234
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCC 41812
||| | ||| || ||| ||| | || || |||| | | ||| || || |||
Sbjct 12970233 GAATCCCCTCTTTATCC-TGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCG 12970175
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || || ||||| || || ||||||||||||||
Sbjct 12970174 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462291968538400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |