Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1523 111 3e-19 seq24992 86.0 1e-11 >seq1523 Length=2040 Score = 111 bits (122), Expect = 3e-19 Identities = 306/462 (66%), Gaps = 8/462 (2%) Strand=Plus/Plus Query 281553 TCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCA 281612 ||| | |||||| || | ||||| || || ||||||||||| |||||||| ||||||| Sbjct 1201 TCTCTTGGATTAAAATTTGGAATTTTTGTTGACCAACCGGTACCAATACCTTCTGAACCA 1260 Query 281613 TTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCA 281672 || || ||||| | || ||||| |||| ||| || ||||||||||| | | | |||| Sbjct 1261 TTAACTAAAATCATTGGAATAATTGGTATATACCAAACTGGTTCAATTCTTTGATTATCA 1320 Query 281673 TC--ATACAAATACT-TCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTA 281729 || | | || || || | | ||||| || || || || | | || || | | Sbjct 1321 TCTGTTTGATATGCTAACAATGGATCATCATGTGGAT-GA--AATATAAGACGTGT-TAA 1376 Query 281730 GGGT-TCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCT 281788 ||| || | || || ||||| | | ||| || ||| |||||||| | || Sbjct 1377 TGGTGACATCATTGTAAAAATATAACGAGGACTAGCACTGTCCTTACCACCACATAATCT 1436 Query 281789 CGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTG 281848 | ||||| ||||| || | || | ||||| || || || || || |||| ||| Sbjct 1437 TGTACCAAATTGACCACTTGGTATTAATAAATTAATATTGTTACTACCAACATAATTCTG 1496 Query 281849 AGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTC 281908 || || || || ||||| || ||| ||||| |||||||| ||||| || ||| Sbjct 1497 TGCAAGATTAACAATTGTTCCACAAAGTGATACTTCACCGTGATGATATGCTGACATTTC 1556 Query 281909 GGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGC 281968 |||| ||||| || ||||| || || || || | | || ||||| | | Sbjct 1557 AGCAATTGAACCAGCCAATTGTGCAACTTTAACTTCACGTTTATCATTACGTTTAATACA 1616 Query 281969 GCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAAC 282010 |||||||||| ||||| || || ||||||||||| Sbjct 1617 TGTGAATAATACTTTACGTTGTCCTGGTTTTAAACCATCAAC 1658 >seq24992 Length=2139 Score = 86.0 bits (94), Expect = 1e-11 Identities = 196/290 (68%), Gaps = 10/290 (3%) Strand=Plus/Minus Query 61178 TGCAAAACTATACGCTTACTGGATTTGTAAA-AATTACCGCGAGTCGTATGGAATGTTTG 61236 ||| ||||| |||| || |||||| |||| || || | || | ||| |||||| Sbjct 1188 TGCTAAACTGTACGGATATTGGATT-GTAATTAACTATAGAGAAGCTTATAACATGTTTT 1130 Query 61237 TATGTAACTCGATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTC 61296 ||||| |||| |||||||| || || | |||||| | | || || ||| Sbjct 1129 CCTGTAATGGAATTTTATTCAATCATGAATCACCTAGAAGAGGTGAAAACTTCGTAACTA 1070 Query 61297 GTAAAATTACGAAGGCGGTTGCAAATATTTTTAACGGTGTCGAAAAATGCATGTATCTA- 61355 | |||||||| | | || ||||| ||| | || || || || |||| | | Sbjct 1069 GAAAAATTACAAGATCAGTGGCAAAAATTCATT--GGAATC--AACTTGAATGTTTTGAA 1014 Query 61356 ---GGAAACATAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATG 61412 || || |||| ||||||||||| |||||| |||| | |||||| | || |||||| Sbjct 1013 TTGGGTAATTTAGATTCTAAAAGAGACTGGGGACATGCCAAGGATTATGTTGAAGCTATG 954 Query 61413 TGGTTGATGTTGCAACAAGATACTCCAGATGACTACGTTATTGCGACTGG 61462 ||| ||||| | |||||||| | || | |||| || ||||| ||||| Sbjct 953 TGGATGATGCTTCAACAAGAAAAACCTCAAGACTTTGTAATTGCAACTGG 904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057461542226090