Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015-
05-28] 26,743 sequences; 41,711,596 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq12311 145 9e-30
>seq12311
Length=1845
Score = 145 bits (160), Expect = 9e-30
Identities = 326/482 (68%), Gaps = 6/482 (1%)
Strand=Plus/Plus
Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227
|||| || | || ||||| |||||| | | ||| || || |||||| ||||||| |
Sbjct 16 CTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATTATTAAAAACTCTAA 75
Query 54228 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 54287
|||||| | | |||||| || |||||| || || | ||||| |||| | ||||
Sbjct 76 GCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATATGTTCCCTTAGCAC 135
Query 54288 GAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 54347
||| | | ||| || || || || || || ||| |||||||| || ||| |
Sbjct 136 GAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGATTAAAGCACATTTTG 195
Query 54348 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTA 54406
||| || ||| || || || |||||||| || ||| ||||| || ||||| |
Sbjct 196 TTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAAA-AGGAAACATGAA 254
Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466
|||||||| || || ||| | || |||| || || ||||| || || || ||
Sbjct 255 GACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAGCATGAGTGAAATAT 314
Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCC 54525
| || || | || ||| || || | ||| ||| || |||| || | ||||||||
Sbjct 315 CTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTTCACCG-TGAATTCC 373
Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT-GTTTATTTTCA 54584
|| || || | ||| | ||| || || || | |||||| || ||||| ||| ||||| |
Sbjct 374 AACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAAT-TTGTTCGTTAATTTTTA 432
Query 54585 GCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 54644
| ||||| ||||| || ||||||||||| || ||||| ||| || || ||||
Sbjct 433 AGAGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCAAAATCACGATCGT 492
Query 54645 AA 54646
||
Sbjct 493 AA 494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593523126290640
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |