Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq22772 89.7 8e-13 >seq22772 Length=1572 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 202756 ATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATAT 202815 || |||||||||||| | | ||||||| | ||| ||||||| | |||||||||||| | Sbjct 1211 ATTAACATCAAATTTTCTTTTACATCCCTGATAGTTCATATAACGAATTTTACCAAAAAC 1270 Query 202816 TGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869 || || ||| ||||| || ||| || | ||| | |||||||||||| || || Sbjct 1271 TGATCGTTCCTTCCAACCTTGATCGTGTAAACCTCCAATTGACCACATGCAACC 1324 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 202756 ATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATAT 202815 || |||||||||||| | | ||||||| | ||| ||||||| | |||||||||||| | Sbjct 1383 ATTAACATCAAATTTTCTTTTACATCCCTGATAGTTCATATAACGAATTTTACCAAAAAC 1442 Query 202816 TGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869 || || ||| ||||| || ||| || | ||| | |||||||| ||| || || Sbjct 1443 TGTTCGTTCCTTCCAACCTTGATCGTGTAAACCCCCAATTGACCCCATGCAACC 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755203460502400