Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq12263 109 1e-18 >seq12263 Length=1580 Score = 109 bits (120), Expect = 1e-18 Identities = 180/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||||| | || ||| |||||| | |||||| | || ||||| || || Sbjct 1110 TGGTGGTACTATTTCTCAAAACTATTAGAATTTTGCGATACGTTTTTCTTCATTCTAAGA 1051 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 |||||| || || | | || |||| || ||||||||| || |||||||| | Sbjct 1050 AAAAAAGAAAAACAATTAACATTCTTACATGTCTATCATCATAGCACAATGTTTACATTG 991 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGGCATTTTTTGGAGCTCAGCTAAAT 52080 | ||||| |||||||||||| || | | ||| ||||| || ||| | | ||| Sbjct 990 TGGTGGATCGGTATTAAATGGGTTCCAAGTGGTTCAACATTTCTTCCAGCAATGGTTAAT 931 Query 52081 TCTTTTATCCATGTTATTATGTACACTTATTATGGTATGGCCGCTTGTGGTCCTATGTTC 52140 || |||| |||||| | ||||| | || |||||| | | ||| |||||||| | Sbjct 930 TCAGTTATTCATGTTTTAATGTATTCGTACTATGGTTTATCAGCTCTTGGTCCTAGAATT 871 Query 52141 AGAAAGTATCTATGGTGGAA 52160 | |||||| |||||||||| Sbjct 870 AATAAGTATTTATGGTGGAA 851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922888186849720