Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7714 113 5e-20 seq10721 107 2e-18 seq24453 105 8e-18 seq3803 104 3e-17 seq2698 95.1 1e-14 >seq7714 Length=2501 Score = 113 bits (124), Expect = 5e-20 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 60045 TTAACGTTTATGAAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGA 60103 |||| |||| |||||||| | ||| || |||||||||||||||||||||||||||||| Sbjct 2095 TTAAAATTTAACAAAAATTTACCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGA 2154 Query 60104 CAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||| ||||| |||||||||||| |||||| Sbjct 2155 CAGGCGGGGATACTTACCACTATACTAACGAGGA 2188 >seq10721 Length=1025 Score = 107 bits (118), Expect = 2e-18 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||| ||||| | |||| || ||||||||||||||||||||||||||||||||||||| Sbjct 572 TTTAAAAAAAAGTACCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 513 Query 60111 ACATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 512 GGATACTTACCACTATACTAACGAGGA 486 >seq24453 Length=1394 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || ||||||||||||||||||||||||||||||||||||| |||| Sbjct 668 AAAAAGTACCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 609 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 608 TTACCACTATACTAACGAGGA 588 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || ||||||||||||||||||||||||||||||||||||| |||| Sbjct 1210 AAAAAGTACCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 1151 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 1150 TTACCACTATACTAACGAGGA 1130 >seq3803 Length=1114 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 524 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 583 Query 60126 TACTACCGAGGA-TTGAATATA 60146 ||||| |||||| ||| || || Sbjct 584 TACTAACGAGGACTTGTATTTA 605 >seq2698 Length=2034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/90 (84%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 60039 AACAAATTAACGTTTATGAAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCC 60096 || |||| || |||| |||||| | ||||| || ||||||||||||||||||||||| Sbjct 1927 AATAAATCAA--TTTAAAAAAAATAGTATCTCCCCGTCAGGGAATCGAACCCTGGTCTCC 1870 Query 60097 CGCGTGACAGGCGGACATACTCACCACTAT 60126 |||||||||||||| ||||| |||||||| Sbjct 1869 CGCGTGACAGGCGGGGATACTTACCACTAT 1840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571626448524040