Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12311 134 1e-26 >seq12311 Length=1845 Score = 134 bits (148), Expect = 1e-26 Identities = 320/484 (66%), Gaps = 0/484 (0%) Strand=Plus/Plus Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 ||||| || || ||||||||||| || |||||| || | | || || || || | Sbjct 9 GCAAAAGCTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATTATTAAAA 68 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 ||||| ||||| || || ||||| || || || || || | | | || Sbjct 69 ACTCTAAGCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATATGTTCCC 128 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 || || ||||| |||| | || || || ||||| | ||||| || || | || Sbjct 129 TTAGCACGAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGATTAAAGCA 188 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 |||| | | ||||| || || || ||||| || ||||| | | | | |||| Sbjct 189 CATTTTGTTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAAAAGGAAA 248 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 || ||||||||||| | | || || || |||||||| || ||||| || || || Sbjct 249 CATGAAGACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAGCATGAGTG 308 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836 || |||| | ||| | || ||| || || | ||| || | || || | || ||||| Sbjct 309 AAATATCTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTTCACCGTGA 368 Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATT 23896 || || | || || | ||||| ||| | ||| || | || || | |||||||| Sbjct 369 ATTCCAACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAATTTGTTCGTTAATT 428 Query 23897 TTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGA 23956 || || ||||| ||||||| ||| || ||||| ||||| || | |||| ||| |||||| Sbjct 429 TTTAAGAGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCAAAATCACGA 488 Query 23957 TCGT 23960 |||| Sbjct 489 TCGT 492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445617385864560