Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015-
05-28] 26,743 sequences; 41,711,596 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq12311 159 4e-34
>seq12311
Length=1845
Score = 159 bits (176), Expect = 4e-34
Identities = 335/494 (68%), Gaps = 4/494 (1%)
Strand=Plus/Plus
Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452
|| || || | | |||| || | || ||||| |||||| | | ||| || || |||
Sbjct 3 TACATAGCAAAAGCTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATTA 62
Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512
||| ||||||| | |||||| | | ||| ||||| |||||||| || || | |||||
Sbjct 63 TTAAAAACTCTAAGCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATAT 122
Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572
||| | ||||||| | | ||| || || || || || || ||| ||||||
Sbjct 123 GTTCCCTTAGCACGAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGATT 182
Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAG 63631
|| || ||| | ||| || ||| || ||||| || ||||| || ||| |||||
Sbjct 183 AAAGCACATTTTGTTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAAA 242
Query 63632 TAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691
|| ||||| ||||||||| || ||| ||| | || |||| || || |||||
Sbjct 243 -AGGAAACATGAAGACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAGC 301
Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-C 63750
|| || || || | || || | || ||| || || | || ||| || |||| |
Sbjct 302 ATGAGTGAAATATCTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTTC 361
Query 63751 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGT 63810
| | |||||||| || || || | ||| | ||| || || || | ||||||||||| |
Sbjct 362 ACCG-TGAATTCCAACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAATTTGTT 420
Query 63811 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63870
||| ||||| || | ||||| ||||| || ||||||||||| || ||||| ||
Sbjct 421 CGTTAATTTTTAAGAGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCAA 480
Query 63871 AGTCTCGTTCGTAA 63884
| || || ||||||
Sbjct 481 AATCACGATCGTAA 494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629607059849040
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |