Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq12311 165 8e-36 >seq12311 Length=1845 Score = 165 bits (182), Expect = 8e-36 Identities = 326/480 (68%), Gaps = 2/480 (0%) Strand=Plus/Plus Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 ||||||||||| |||| || ||||| || || ||| |||| |||||| | | ||| Sbjct 15 GCTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATTATTAAAAACTCTA 74 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 | ||| ||||| | |||||| || | || || | || | |||||| || |||||||| Sbjct 75 AGCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATATGTTCCCTTAGCA 134 Query 38275 CGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334 || | | | || ||||| || || || || |||||| |||||||| |||| | Sbjct 135 CGAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGATTAAAGCACATTTT 194 Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 ||| || | | || ||||| ||||| || || |||| || | ||||| | Sbjct 195 GTTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAAAAGGAAACATGAA 254 Query 38395 GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCAT 38454 |||||||| || || ||| | || |||| || || || ||||| |||| || Sbjct 255 GACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAGCATGAGTGAAATAT 314 Query 38455 TTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCT 38514 | ||||| || ||||||| |||| ||| | || || |||| | |||||||| || Sbjct 315 CTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTTCACCGTGAATTCCA 374 Query 38515 AGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT-CTGTTTAAG 38573 | || ||| ||||| ||||||||||| || | ||| | |||| | || | |||||| Sbjct 375 ACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAATTTGTTCGTTAATTTTTAAG 434 Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||||| || ||| | ||| || | ||||| ||| | || | |||| | |||||| Sbjct 435 -AGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCAAAATCACGATCGTA 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468368178015920