Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12311 150 3e-31 >seq12311 Length=1845 Score = 150 bits (166), Expect = 3e-31 Identities = 335/495 (68%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || || || | | |||| |||| || ||||| |||||| | | ||| || || ||| Sbjct 3 TACATAGCAAAAGCTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATTA 62 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 ||| ||||||| | |||||| | | |||||| || ||||||| || || | ||||| Sbjct 63 TTAAAAACTCTAAGCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATAT 122 Query 80185 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 80244 |||| | ||||||| | | ||| || || || || || || ||| |||||| Sbjct 123 GTTCCCTTAGCACGAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGATT 182 Query 80245 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAG 80303 || || ||| | ||| || ||| || || || || ||||| ||| ||| ||||| Sbjct 183 AAAGCACATTTTGTTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAAA 242 Query 80304 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 || ||||| ||||||||| || || ||| | || |||| || || ||||| Sbjct 243 -AGGAAACATGAAGACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAGC 301 Query 80364 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-C 80422 || || || || | || || | || ||| || || | || ||| ||| |||| | Sbjct 302 ATGAGTGAAATATCTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTTC 361 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 | | |||||||| || || || | ||| | ||| || || || | |||||| || |||| Sbjct 362 ACCG-TGAATTCCAACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAAT-TTGT 419 Query 80483 TATTTA-TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 80541 | ||| |||| || | || || ||||| || ||||||||||| || ||||| | Sbjct 420 TCGTTAATTTTTAAGAGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCA 479 Query 80542 AAGTCTCGTTCGTAA 80556 || || || |||||| Sbjct 480 AAATCACGATCGTAA 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718028691718520