Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12311 141 1e-28 >seq12311 Length=1845 Score = 141 bits (156), Expect = 1e-28 Identities = 333/495 (67%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || || || | | |||| || | || ||||| |||||| | | ||| || || ||| Sbjct 3 TACATAGCAAAAGCTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATTA 62 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 ||| ||||||| | |||||| | | |||||| || |||||| || || | ||||| Sbjct 63 TTAAAAACTCTAAGCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATAT 122 Query 72268 CTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 72327 |||| | ||||||| | ||| || || || || || || ||| |||||| Sbjct 123 GTTCCCTTAGCACGAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGATT 182 Query 72328 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAG 72386 || || ||| | ||| || ||| || || || |||||||| || ||| ||||| Sbjct 183 AAAGCACATTTTGTTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAAA 242 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 || ||||| ||||||||| || || ||| | || |||| || || ||||| Sbjct 243 -AGGAAACATGAAGACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAGC 301 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-C 72505 || || || || | || || | || ||| || || | || ||| ||| |||| | Sbjct 302 ATGAGTGAAATATCTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTTC 361 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 | | || ||||| || || || | ||| | |||||| || || | |||||| || |||| Sbjct 362 ACCG-TGAATTCCAACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAAT-TTGT 419 Query 72566 TATTTA-TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624 | ||| |||| || | ||||| ||||| || ||||||||||| || ||||| | Sbjct 420 TCGTTAATTTTTAAGAGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCA 479 Query 72625 AAGTCTCGTTCGTAA 72639 || || || |||||| Sbjct 480 AAATCACGATCGTAA 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670914846554680