Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq15244 100 2e-16 >seq15244 Length=2162 Score = 100 bits (110), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 15225 CAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTC 15283 |||| | |||||||||||||| || ||| || |||||||| || ||| || ||| Sbjct 1 CAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCT- 59 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || |||||| ||| || || | ||| ||||| || ||||| ||| Sbjct 60 TTGACATTTTCGATAGTATCGGAGGGTTCGACCTCAAGGGTGATGGTCTTCCCTGTGAGA 119 Query 15344 GTTTTTACAAAAATTTGCATATTTGAA 15370 ||||| |||||||| |||||||||||| Sbjct 120 GTTTTCACAAAAATCTGCATATTTGAA 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362061154820163