Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12263 129 1e-24 seq15244 116 9e-21 >seq12263 Length=1580 Score = 129 bits (142), Expect = 1e-24 Identities = 212/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| ||| |||| ||| | |||||| ||||| | |||||||| ||| || Sbjct 1110 TGGTGGTACTATTTCTCAAAACTATTAGAATTTTGCGATACGTTTTTCTTCATTCTAAGA 1051 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 || ||| || ||| | | || ||||||| ||||||||| || |||||||| ||| Sbjct 1050 AAAAAAGAAAAACAATTAACATTCTTACATGTCTATCATCATAGCACAATGTTTACATTG 991 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAGCGTTTCTAGGAGCTGAAATAAAT 78673 | ||||| |||||||||||| | || | || | | ||||| ||| | ||| Sbjct 990 TGGTGGATCGGTATTAAATGGGTTCCAAGTGGTTCAACATTTCTTCCAGCAATGGTTAAT 931 Query 78674 TCATTCGTACACGTTATTATGTATACTTATTACGGTATTGCTGCATGCGGCCCTACATTT 78733 ||| | | || ||| | |||||| | || || ||| | | || || |||| | || Sbjct 930 TCAGTTATTCATGTTTTAATGTATTCGTACTATGGTTTATCAGCTCTTGGTCCTAGAATT 871 Query 78734 CGTAAGTATTTGTGGTGGAAGAGATATCTTACTATAATGCAATTGATTCAATTTCATATA 78793 ||||||||| ||||||||||||||| | || || ||| | || |||||| || | Sbjct 870 AATAAGTATTTATGGTGGAAGAGATATTTAACAATTGCACAACTCATACAATTTTTTACA 811 Query 78794 GCTATA 78799 ||| || Sbjct 810 GCTTTA 805 >seq15244 Length=2162 Score = 116 bits (128), Expect = 9e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 104421 CAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTT 104480 ||||||| || | | |||||||| || || || ||||||||||| |||||||| |||| Sbjct 1 CAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTT 60 Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 | |||||||| | |||||| ||||| ||||| || || || ||||| || || || | Sbjct 61 TGACATTTTCGATAGTATCGGAGGGTTCGACCTCAAGGGTGATGGTCTTCCCTGTGAGAG 120 Query 104541 TTTTTACAAATATCTGCATTTT 104562 |||| ||||| |||||||| || Sbjct 121 TTTTCACAAAAATCTGCATATT 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151003879455044