Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq22036 248 1e-60 >seq22036 Length=1417 Score = 248 bits (274), Expect = 1e-60 Identities = 479/703 (68%), Gaps = 28/703 (4%) Strand=Plus/Minus Query 164395 TGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGA 164454 ||| |||| | |||||||| | ||||| | ||| |||||| | || || || Sbjct 695 TGGGATTTCGGTAAAATGGGAATCGGTGGTTTGGATAAAGAATTCAATGCAATCTTTCGA 636 Query 164455 CGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACAT 164514 || ||||| ||||| | |||| ||||| | || |||| || || ||||| Sbjct 635 CGTGCATTCGCTTCACGTGTTTTTCCACCAGAAATTGTTGAACAATTGGGTTGCAAACAC 576 Query 164515 ATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGC 164574 | ||||||||||||||| |||||| || ||| ||||||||| |||||||||||| Sbjct 575 GTTAAAGGAATTTTATTATTTGGACCACCGGGTACCGGTAAAACTTTAATGGCTCGACAA 516 Query 164575 ATTGCT-CAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTGAATTATT 164630 || | | ||| | |||||| | || || ||||||||||||||||| | |||| Sbjct 515 ATCGGTACAA--TGTTAAATGCCAGAGAACCA--AAAATTGTTAATGGTCCACAGGTATT 460 Query 164631 GAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGA 164690 | | |||||||| |||||||| ||||| ||| || ||| | ||| || |||||||| Sbjct 459 GGATAAATATGTTGGTGAGTCTGAAGCAAATATTCGAAGACTTTTTGCTGATGCTGAAGA 400 Query 164691 AGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGA 164750 ||| | || || | ||| | ||| | ||| |||||||||| || || Sbjct 399 GGAAGAGAAACGTTTGGGACCAAACAGTGGTCTTCATATAATTATTTTTGATGAAATCGA 340 Query 164751 TGCTCTTTGCAAAAAACG---------TGGTGATAATATTA---TTCATGATGCAGTGGT 164798 ||| |||| ||| | | ||||| ||| | | |||||||| | || || Sbjct 339 TGCAATTTGTAAATCAAGAGGTTCCGTTGGTGGTAACAGTGGTGTTCATGATACTGTTGT 280 Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGG 164858 |||||| | | || ||||| |||||||| ||| |||||||||||||| ||| | || Sbjct 279 TAATCAACTTTTATCCAAAATCGATGGTGTCGAACAGTTAAATAATATTTTGATTATTGG 220 Query 164859 TATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATT 164918 |||||| || |||| ||| | |||||||| ||||| || || || ||||| || ||| | Sbjct 219 TATGACAAATCGACGAGATATGATTGATGAGGCTTTGTTGCGTCCGGGTCGTTTGGAAGT 160 Query 164919 GAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGT 164978 |||| ||||| | ||||| | || | ||||| | |||||| ||||| ||||| Sbjct 159 ACAAATGGAAATTAGTTTACCAAATGAACAGGGACGTCATCAAATCTTAAATATTCAT-- 102 Query 164979 GGCTAAAATGAAATCCTG----TGATATATTATCTCCCGATGTAGATTTAAATAAAATAG 165034 |||| ||| || | | | | || ||| ||||| ||| || || ||| Sbjct 101 --ACAAAACGAATGGTTGAACATAAAAAAATAAATCCAGATGTTGATAATAAAGAATTAG 44 Query 165035 CTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATT 165077 ||| ||| |||||| |||||||||||||| ||||| || Sbjct 43 CTGGAATAACACAAAATTTCAGTGGTGCTGAATTGGAGGGTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595672807438800