Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq25963 109 3e-19 seq22478 105 3e-18 seq13448 102 4e-17 seq11481 102 4e-17 seq6224 102 4e-17 >seq25963 Length=1239 Score = 109 bits (120), Expect = 3e-19 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| | ||||||| | || |||| |||| |||||||||| ||||||||||||||| Sbjct 270 AATAAGTAAAAAAAAAGATCTGGCTCATGTGGGGATCGAACCCAAGACCTTCGCGTTATT 329 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||||| |||||||||||||||||||||| Sbjct 330 AGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 365 >seq22478 Length=1828 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||| |||| |||||||||| ||||||||||||||||||||||| Sbjct 188 AAAAAAT--ATTTGGCTCATGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGCACGAC 245 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 246 GCTCTAACCAACTGAGCTAATGGGCC 271 >seq13448 Length=1390 Score = 102 bits (112), Expect = 4e-17 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||| |||| |||||||||| |||||||||||||||||||||||||||| | Sbjct 326 AAATATGGCTCATGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAA 267 Query 11511 CCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| Sbjct 266 CCAACTGAGCTAATGGGCCG 247 >seq11481 Length=1362 Score = 102 bits (112), Expect = 4e-17 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||| |||| |||||||||| |||||||||||||||||||||||||||| | Sbjct 194 AAATATGGCTCATGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAA 253 Query 11511 CCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| Sbjct 254 CCAACTGAGCTAATGGGCCG 273 >seq6224 Length=1115 Score = 102 bits (112), Expect = 4e-17 Identities = 82/99 (83%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||| || || ||||||| | |||| |||| |||||||||| |||||||||| Sbjct 959 ATATTTAAATATTAAAAAAATA---TGGCTCATGTGGGGATCGAACCCAAGACCTTCGCG 903 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||||||||||||||||||| Sbjct 902 TTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 864 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261405972091468