Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8543 163 4e-36 >seq8543 Length=1097 Score = 163 bits (180), Expect = 4e-36 Identities = 182/239 (76%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 16463 AACAT-CCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAA 16521 ||||| ||||||||| || || |||||||| |||||| |||| |||||||||||||| || Sbjct 687 AACATNCCAAGGAATTACTAAACCAGCTATTCGTCGTTTGGCGCGTCGTGGTGGAGTTAA 746 Query 16522 GCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGAC 16581 ||| | |||||||| | |||||||| | ||| | ||||| || | || | | | Sbjct 747 ACGTATTTCTGGATTAATTTATGAAGAAACTCGAGGAGTTTTAAAAGTATTTTTGGAAAA 806 Query 16582 CGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCA 16640 ||||| | ||||||| || || |||||||| || || ||||||||||| || || | | Sbjct 807 TGTTATTCGTGATGCTGTTACA-TATACCGAACATGCAAAACGTAAGACAGTAACTGCAA 865 Query 16641 TGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| |||||||| || |||| | || ||||| ||| ||||| Sbjct 866 TGGACGTTGTTTATGCATTAAAACGTCAGGGACGTACATTGTACGGTTTCGGAGGTTAA 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79050748687899