Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq19379 107 4e-19 >seq19379 Length=12950 Score = 107 bits (118), Expect = 4e-19 Identities = 344/524 (66%), Gaps = 15/524 (3%) Strand=Plus/Plus Query 7195 TCACTGTCTTTATCTATTACCACAAATCCATATTTAT---TCCAACATGCCGAGCATAAA 7251 || || ||||||||||| |||| ||||||||||||| |||||||| | || | | Sbjct 6917 TCGCTATCTTTATCTATCACCATGAATCCATATTTATCCTTCCAACATTCTCTACAGATA 6976 Query 7252 TCTCTGAATGAGTTGTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGA 7311 || ||| || ||| ||||| | ||| |||||||| || | || | || ||| Sbjct 6977 TCGAGAAATTGCTTAAATGTGATGTCGGGATTCACATGATCGGCAAATATTTTTTTTAGA 7036 Query 7312 TTCATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTG 7371 |||| ||||||||| || | | | || || | ||| || | ||| | ||| || Sbjct 7037 TTCAGTTCATCTTGCTTAAATATTATTATCAAATTAGAATTGTCACGAATTAAGTGTTTA 7096 Query 7372 GGTATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATG 7431 || || || |||| ||||||| | || || |||||| ||||| ||| || Sbjct 7097 GGAATCCGGTTATATGTTTGACTTAAGTAAAATGAATCAACAAGAGAGTGTCTACCGATT 7156 Query 7432 CAGAAAAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAG 7491 | ||| | || || | ||| ||||||||||| ||||||||||| || ||||| | Sbjct 7157 GAAAAATATGCGCGTATATTATCTTGTTTTTCACATGCAACATCGTCGAAAATCATTACA 7216 Query 7492 GAGTTAGGCTTAGCATCT--TCAGGCTTGA-TTACAGCTTCA-TGTTCGCTGAAT--GTG 7545 || || ||| |||| | ||| |||| ||| | ||| |||| | | ||| ||| Sbjct 7217 GAATTTTTTTTA--ATCTGATGAGG-TTGAGGTACTTCGTCATTGTTTG-TAAATCCGTG 7272 Query 7546 AAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGG 7605 | || | ||| |||| || ||| | || | || || ||| |||||| | ||| Sbjct 7273 A--TATTCCATATCATCTATTGTTTTCAACATTTCTTCAAGTAACATATACTTGGATTGA 7330 Query 7606 TTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTCAAACCGTTTGGATGTACAATA 7665 | ||| |||| || | ||| ||||| | ||| | || || ||| || | ||| Sbjct 7331 AATAAAGATTTTGCATACACATAAATATTTTGAAATCGTAATCCATTTACATCTTCAAGC 7390 Query 7666 AGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGCCCGCA 7709 | | || | ||||| |||||||||||||| || || || Sbjct 7391 AAACTCATTAATAAGTTCGTTTTTCCACAGTTTGAAGGACCACA 7434 Score = 105 bits (116), Expect = 1e-18 Identities = 231/346 (67%), Gaps = 0/346 (0%) Strand=Plus/Plus Query 5318 CCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCT 5377 |||||| || |||| || || | ||| | | |||| |||||| |||||||||||||| Sbjct 5323 CCACATCTTACTCTTCAGCGTACGATTCCATCTTTCAACTATGGAGGCTTTGAGATTGCT 5382 Query 5378 GAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTA 5437 |||| |||||||| || || || | | ||||| | || || |||||| || Sbjct 5383 ATATGTAGAATACAGGTTAATATTATATTTAAGCATCAATGCCTTAAAAGATTTGTTATA 5442 Query 5438 AAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGCTGAAGTACAGA 5497 ||| ||| ||| | |||||| || | ||| | |||| | | || | | ||| Sbjct 5443 AAATTCTGAACCATTATCAACCTGTAAATTTAAACATTTACGCCTTCCCTTTAAAATAGA 5502 Query 5498 CTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATA 5557 | |||||| | || ||| || | |||| | || | ||||| |||||| ||| | Sbjct 5503 TTCCATAGCGGTCGTTGTGTCTGCAGCTGTTTTTGTTTTTAATGGAATTGCCCAAGCAAA 5562 Query 5558 TTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGACTGTTGCATA 5617 ||| || ||| |||| || | ||| || ||||| | || |||||||| | | | ||| Sbjct 5563 TTTGGAGAATGTATCAATAACTGTGAGTAGATATCTATACCCTTTATTTATATTGGAATA 5622 Query 5618 TGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGAGACCT 5663 || | ||||| || || |||||||| ||||| | |||| Sbjct 5623 GGGTTGAAGTTCAACTAAATCTGCTTGCCATAAATCATCTATACCT 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97943285963622