Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq24992 107 3e-18 >seq24992 Length=2139 Score = 107 bits (118), Expect = 3e-18 Identities = 183/261 (70%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||| ||| | |||||||| ||||| || ||||||||||| | || |||||| | || || Sbjct 1122 TGGAATTTTATTCAATCATGAATCACCTAGAAGAGGTGAAAACTTCGTAACTAGAAAAAT 1063 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTT--ATCTTGGTAAT 194063 |||| | | | || || || ||||| | | || | ||| | | |||||| Sbjct 1062 TACAAGATCAGTGGCAAAAAT-TCA-TTGGAATCAACTTGAATGTTTTGAATTGGGTAAT 1005 Query 194064 CTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATG 194123 | || |||| || || |||||||| || ||||||||||||||||| |||||| | ||| Sbjct 1004 TTAGATTCTAAAAGAGACTGGGGACATGCCAAGGATTATGTTGAAGCTATGTGGATGATG 945 Query 194124 TTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGA 194183 | ||||| || |||| | || | ||| ||||| || ||| || | ||||| | Sbjct 944 CTTCAACAAGAAAAACCTCAAGACTTTGTAATTGCAACTGGTAAAACTCACAGTGTTAAA 885 Query 194184 GACTTTGTGAATGAAGCAGCA 194204 || |||||| ||||| ||| Sbjct 884 GAATTTGTG---GAAGCTGCA 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807285244391080