Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq19619 178 9e-40 seq7613 140 2e-28 seq3606 140 2e-28 seq22044 122 6e-23 seq4221 122 6e-23 seq21045 104 2e-17 seq9447 93.3 3e-14 seq2201 93.3 3e-14 seq1753 84.2 1e-11 >seq19619 Length=2748 Score = 178 bits (196), Expect = 9e-40 Identities = 291/417 (70%), Gaps = 2/417 (0%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| || || || || || || || |||||||| | || |||||| || || |||| Sbjct 1598 ATGTTGCCGATGCATTTTATCGTTATAAAATGCCAAGAATTAACGCCAAAGTTGAAGGTA 1657 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 | || || |||||||||||||| ||||| || ||| |||||| || || || | |||| Sbjct 1658 AAGGTAATGGTATTAAAACCGTTATTGTTAATATGATTGAAGTTGCAAAAGCAATTGGAC 1717 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | || || || || || || |||||||| || || ||| | || || || || || |||| Sbjct 1718 GTCCAGCAACTTATCCAACAAAATATTTTGGTTGTGAATTGGGTGCACAAACTCAATTTG 1777 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 || | || || || || || || || || || || ||| | | | || | || || Sbjct 1778 ATTATAAGAATGAACGTTTTATTGTAAATGGTTCACATGATGCATCAAAATTACAAGATC 1837 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | | || || || ||||| |||| ||| | |||| ||||| ||||| || || || | Sbjct 1838 TTTTGGATGGTTTCATTCGAAAGTATGTTTTATGTCCAGAATGTGATAATCCAGAAACTG 1897 Query 6487 AGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACC 6546 | | |||| || || | | | || |||||||| || || ||||| || ||||| | Sbjct 1898 AATTACTTGTTGCTGTTAAAAAACAAACAATCTCTCAAGGTTGTAAAGCATGTGGTTATC 1957 Query 6547 ATGGCAAGCTGGATTTATCA-CACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 |||| || || | ||| || ||| ||||||| || || | |||||||||||| Sbjct 1958 ATGGACCACTTGAAGT-TCATCATAAAGTCAACACATTTATTATAAAGAATCCTCCA 2013 >seq7613 Length=1641 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 167 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 226 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 227 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 261 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 |||||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 55 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTAGTTAATCC 114 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||| Sbjct 115 ATTCCTGCGCGTCACTAATTAGATGACGA 143 >seq3606 Length=1094 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 905 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 964 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 965 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 999 >seq22044 Length=1403 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1141 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 1140 GGTTATATTTAGCCTTA 1124 >seq4221 Length=1962 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1271 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1330 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 1331 GGTTATATTTAGCCTTA 1347 >seq21045 Length=2148 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 272 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 331 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 332 GCCAATATTTAGCTTTA 348 >seq9447 Length=1078 Score = 93.3 bits (102), Expect = 3e-14 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25896 TATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAA 25950 || || || |||||| ||||||| | |||||||||||||||||||||| || || Sbjct 452 TAGAAAAAACCCGTTGCCTTGGCCATAATTTCGCTAGATAGTAGATAGGGACAGTGGGAA 511 Query 25951 TCTCGTTAATCCTTTCATGCGCGTCACTAAT 25981 |||||||||||| |||||||| ||||||||| Sbjct 512 TCTCGTTAATCCATTCATGCGAGTCACTAAT 542 >seq2201 Length=1200 Score = 93.3 bits (102), Expect = 3e-14 Identities = 79/97 (81%), Gaps = 9/97 (9%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-------GGTAATCTC 25954 |||||| ||||||||||| ||||| ||||||||||||||| || || |||||| Sbjct 362 AAGCCCATTCCCTTGGCTACGGTTTTGCTAGATAGTAGATAAGGACAGTATGGGAATCTC 421 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||||| ||||| ||||||||||||| ||||||| Sbjct 422 GTAAATCCATTCAT--GCGTCACTAATTATATGACGA 456 >seq1753 Length=1373 Score = 84.2 bits (92), Expect = 1e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||| |||| ||||||||||||||||||||||| ||||||||| | ||||||||||| Sbjct 1248 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACAGTACTTGTTTGATATCGGTCTCG 1190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334838030554433