Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq12311 154 2e-32 >seq12311 Length=1845 Score = 154 bits (170), Expect = 2e-32 Identities = 336/495 (68%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 || || || | | |||| || | || ||||| |||||| | | ||| || || ||| Sbjct 3 TACATAGCAAAAGCTCCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATTA 62 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 ||| ||||||| | |||||| | | |||||| || ||||||| || || | ||||| Sbjct 63 TTAAAAACTCTAAGCATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATAT 122 Query 63317 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63376 |||| | ||||||| | | ||| || || || || || || ||| |||||| Sbjct 123 GTTCCCTTAGCACGAACACAATGAATATTTAATCCAATACCTCCAGCTGATTTTGAGATT 182 Query 63377 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAG 63435 || || ||| | ||| || ||| || || || |||||||| || ||| ||||| Sbjct 183 AAAGCACATTTTGTTAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAAA 242 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 || ||||| ||||||||| || || ||| | || |||| || || ||||| Sbjct 243 -AGGAAACATGAAGACATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAGC 301 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-C 63554 ||||| || || | || || | || ||| || || | || ||| || |||| | Sbjct 302 ATGAGTGAAATATCTCTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTTC 361 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 | | |||||||| || || || | ||| | ||| || || || | |||||| || |||| Sbjct 362 ACCG-TGAATTCCAACAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAAT-TTGT 419 Query 63615 T-GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673 | ||| ||||| || | ||||| ||||| || ||||||||||| || ||||| | Sbjct 420 TCGTTAATTTTTAAGAGATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCA 479 Query 63674 AAGTCTCGTTCGTAA 63688 || || || |||||| Sbjct 480 AAATCACGATCGTAA 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633420184742800