Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq19560 118 1e-21 seq2615 114 1e-20 seq5614 107 2e-18 seq194 107 2e-18 seq11672 105 7e-18 seq8364 105 7e-18 seq5148 105 7e-18 seq17571 96.9 4e-15 >seq19560 Length=1504 Score = 118 bits (130), Expect = 1e-21 Identities = 83/94 (88%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| ||||||||| |||||||||||||||||||||| |||||||| | | | ||||| Sbjct 715 GTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACGATTGTGAGCG 774 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||| |||||||||| || || Sbjct 775 TGGGTTCGAACCCCACATCTGACAAATTTTTTTT 808 >seq2615 Length=1777 Score = 114 bits (126), Expect = 1e-20 Identities = 84/97 (87%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||| ||||||||||| |||||||||||||||||||||| |||||||| | | | || Sbjct 217 ACAGTCGGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACTATTGTGA 158 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||| | |||| || ||| || Sbjct 157 GCGTGGGTTCGAACCCCACATCCGACATATGATTTTT 121 >seq5614 Length=1547 Score = 107 bits (118), Expect = 2e-18 Identities = 110/143 (77%), Gaps = 8/143 (6%) Strand=Plus/Plus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--T 126315 |||||| |||| ||||||||||| |||||||||||||||||||||| |||||||| | | Sbjct 1353 TATTTAAAGTCGGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAAT 1412 Query 126316 CGGGAGCGTGGGTTCGAACCCCACACCTGACAAATTA------TTATTGGAATTTTTGTT 126369 | |||||||||||||| ||||||| |||| | || || ||| | | ||| || Sbjct 1413 TGTGAGCGTGGGTTCGAGCCCCACATACGACATAGTAATAACTTTTTTGTACTATTTTTT 1472 Query 126370 GCGGTTGGGACTTAAATAAAAAT 126392 | || ||||| | ||||||| Sbjct 1473 GGCCTTTGGACTATACTAAAAAT 1495 >seq194 Length=1062 Score = 107 bits (118), Expect = 2e-18 Identities = 88/105 (84%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||| ||||||||||| |||||||||||||||||||||| |||||||| | | | |||| Sbjct 605 AGTCGGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAATTGTGAGC 664 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 |||||||||||||||||| | |||| | || || | | |||||| Sbjct 665 GTGGGTTCGAACCCCACATCCGACATAATAATAAT--ATTTTTTG 707 >seq11672 Length=1741 Score = 105 bits (116), Expect = 7e-18 Identities = 79/92 (86%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--T 126315 || ||| |||| | ||||||||| |||||||||||||||||||||| |||||||| | | Sbjct 1220 TAATTAAAGTCGGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAAT 1279 Query 126316 CGGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 | |||||||||||||||||||||| | |||| Sbjct 1280 TGTGAGCGTGGGTTCGAACCCCACATCCGACA 1311 >seq8364 Length=1744 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||| ||||||||||| |||||||||||||||||||||| |||||||| | | | |||| Sbjct 485 AGTCGGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAATTGTGAGC 544 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||| | |||| Sbjct 545 GTGGGTTCGAACCCCACATCCGACA 569 >seq5148 Length=2834 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||| ||||||||||| |||||||||||||||||||||| |||||||| | | | |||| Sbjct 139 AGTCGGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACGATTGTGAGC 80 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||| | |||| Sbjct 79 GTGGGTTCGAACCCCACATCCGACA 55 >seq17571 Length=1268 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||| ||||||||||| |||||||||||||||||||||| |||||||| | | | |||| Sbjct 120 AGTCGGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAATTGTGAGC 179 Query 126323 GTGGGTTCGAACCCC 126337 ||||||||||||||| Sbjct 180 GTGGGTTCGAACCCC 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556674648395320