Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4314 89.7 1e-12 seq84 89.7 1e-12 seq22790 87.8 4e-12 seq19889 87.8 4e-12 seq23662 86.0 1e-11 seq7467 86.0 1e-11 seq3694 86.0 1e-11 seq10856 84.2 4e-11 >seq4314 Length=1068 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||| |||||||||||||||||||||||| | ||||||||||||| | |||| ||||||| Sbjct 814 ATATCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCAAGGGTTCG 755 Query 142561 AGCCCCACATCGGG 142574 |||||| || ||| Sbjct 754 AGCCCCTTATTGGG 741 >seq84 Length=1840 Score = 89.7 bits (98), Expect = 1e-12 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||| |||||||||||||||||||||||| | ||||||||||||| | |||| ||||||| Sbjct 686 ATATCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCAAGGGTTCG 627 Query 142561 AGCCCCACATCGGGCAGAA 142579 |||||| || ||| |||| Sbjct 626 AGCCCCTTATTGGG-AGAA 609 >seq22790 Length=1323 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142499 AGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 ||||| ||| ||||||||||||||||||||| | ||||||||||||| | |||| |||| Sbjct 481 AGATAAGCCTGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCAAGGGT 540 Query 142558 TCGAGCCCCACATCGGGC 142575 ||||||||| || |||| Sbjct 541 TCGAGCCCCTTATTGGGC 558 >seq19889 Length=1157 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| ||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 117 AGCCTGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCAAGGGTTCGAG 176 Query 142563 CCCCACATCGGGC 142575 |||| || |||| Sbjct 177 CCCCTTATTGGGC 189 >seq23662 Length=1486 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 142060 TGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 543 TGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 487 >seq7467 Length=1635 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 142060 TGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 690 TGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 746 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 142060 TGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1202 TGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 1258 >seq3694 Length=1276 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 142060 TGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 197 TGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 141 >seq10856 Length=1305 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||| | ||||||||||||||||||| | ||||||||||||| | |||| |||||||| Sbjct 971 TAGCCTGATTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCAAGGGTTCGA 1030 Query 142562 GCCCCACATCGGGC 142575 ||||| || |||| Sbjct 1031 GCCCCTTATTGGGC 1044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027484617180863