Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq16414 104 2e-17 seq499 95.1 1e-14 seq13103 87.8 1e-12 >seq16414 Length=1218 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 760 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 701 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 700 ATAACTGATATAATGAGCCTTTTGCGGTTTC 670 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 760 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 701 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 700 ATAACTGATATAATGAGCCTTTTGCGGTTTC 670 >seq499 Length=1356 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/93 (85%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| | | || ||||||||||| Sbjct 801 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTTTGGATATGATCTAAGGAA 742 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 ||| |||||||||| |||||| || | ||| || Sbjct 741 CCATAACTGATATAATGAGCCTTTTGCGGTTTC 709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/93 (85%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| | | || ||||||||||| Sbjct 801 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTTTGGATATGATCTAAGGAA 742 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 ||| |||||||||| |||||| || | ||| || Sbjct 741 CCATAACTGATATAATGAGCCTTTTGCGGTTTC 709 >seq13103 Length=1414 Score = 87.8 bits (96), Expect = 1e-12 Identities = 70/79 (89%), Gaps = 4/79 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AG-TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| | || || ||||||||||| Sbjct 434 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTTTAGATATGATCTAAGGAA 375 Query 115587 CCAAAACTGATATATTGAG 115605 ||| |||||||||| |||| Sbjct 374 CCATAACTGATATAATGAG 356 Score = 87.8 bits (96), Expect = 1e-12 Identities = 70/79 (89%), Gaps = 4/79 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AG-TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| | || || ||||||||||| Sbjct 434 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTTTAGATATGATCTAAGGAA 375 Query 114390 CCAAAACTGATATATTGAG 114408 ||| |||||||||| |||| Sbjct 374 CCATAACTGATATAATGAG 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396932985327886