Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7714 104 3e-17 seq10721 98.7 1e-15 seq24453 96.9 4e-15 seq3803 95.1 1e-14 seq2698 86.0 7e-12 >seq7714 Length=2501 Score = 104 bits (114), Expect = 3e-17 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 56986 TTAACGTTTATGAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGA 57044 |||| |||| |||||||| | ||| || || | ||||||||||||||||||||||||| Sbjct 2095 TTAAAATTTAACAAAAATTTACCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGA 2154 Query 57045 CAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||||| ||||| |||||||||||| |||||| Sbjct 2155 CAGGCGGGGATACTTACCACTATACTAACGAGGA 2188 >seq10721 Length=1025 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||| ||||| | |||| || || | |||||||||||||||||||||||||||||||| Sbjct 572 TTTAAAAAAAAGTACCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 513 Query 57052 ACATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 512 GGATACTTACCACTATACTAACGAGGA 486 >seq24453 Length=1394 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || || | |||||||||||||||||||||||||||||||| |||| Sbjct 668 AAAAAGTACCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 609 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 608 TTACCACTATACTAACGAGGA 588 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || || | |||||||||||||||||||||||||||||||| |||| Sbjct 1210 AAAAAGTACCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 1151 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 1150 TTACCACTATACTAACGAGGA 1130 >seq3803 Length=1114 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 524 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 583 Query 57067 TACTACCGAGGA-TTGAATATA 57087 ||||| |||||| ||| || || Sbjct 584 TACTAACGAGGACTTGTATTTA 605 >seq2698 Length=2034 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/90 (82%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 56980 AACAAATTAACGTTTATGAAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCC 57037 || |||| || |||| |||||| | ||||| || || | |||||||||||||||||| Sbjct 1927 AATAAATCAA--TTTAAAAAAAATAGTATCTCCCCGTCAGGGAATCGAACCCTGGTCTCC 1870 Query 57038 CGCGTGACAGGCGGACATACTCACCACTAT 57067 |||||||||||||| ||||| |||||||| Sbjct 1869 CGCGTGACAGGCGGGGATACTTACCACTAT 1840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543031210751120