Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq25900 98.7 1e-15 >seq25900 Length=2493 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/241 (70%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 126948 TTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCT 127007 ||| | ||||||||||| ||||| ||||| || |||||||| | |||||||| ||| | Sbjct 914 TTTCTTGGTCCAACATATTATCAGCGTCTCAAGCATATGGTCGATGATAAAATTCATTCG 855 Query 127008 AGAAGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTGT----GGTCGTTCCCA 127063 ||| | ||||| ||| | ||| | |||| ||| || | |||||| | | Sbjct 854 AGAGCACGTGGTCCTGTA--CAGATT--TTGGTCAGACAACCTATGGAGGGTCGTGCACG 799 Query 127064 AGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGT--ATTTTGGTTCATGGAGCC 127121 | |||||| ||| | ||||| ||||||||| |||||| | ||| |||||||| Sbjct 798 TGATGGTGGTTTACGTTTTGGTGAAATGGAACGTGATTGTCAAATTT--CCCATGGAGCT 741 Query 127122 ACACAATTTTTAAATGAAAGAATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTGTGT 127181 |||||||||||| ||| | | ||| | ||| ||||||| | ||| |||| ||| Sbjct 740 GCACAATTTTTAAGAGAACGTCTTTTTGAAGTTTCTGATCCTTATAGAATACATGTTTGT 681 Query 127182 A 127182 | Sbjct 680 A 680 Score = 96.9 bits (106), Expect = 5e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 126589 TACGTATACCAGAAATTGGAGACAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGT 126647 |||||| |||| ||||||| || |||||| ||| | |||| | |||||||||| || Sbjct 1385 TACGTACACCACAAATTGGTGATAAATTTGCTTCACGCCATGGAC-AAAAAGGAACATGC 1327 Query 126648 GGTATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCGATATT 126707 || || || || || || |||||||| |||||| ||| | || ||||||||| Sbjct 1326 GGAATTATGTACCGTCAGGAGGATATGCCATTTACATGTGAAGGACTAACACCCGATATT 1267 Query 126708 ATAATTAATCCAAATTGTATACCGTCAAGAATGACCATAAATCAAATAATTGCAACTGTT 126767 ||||||||||| || || || ||| | ||||| || ||| |||||| | | || Sbjct 1266 ATAATTAATCCGCATGCCATTCCATCACGTATGACAATTGGTCATTTAATTGAATGTCTT 1207 Query 126768 ATGGGTAAATTA 126779 |||||||||| Sbjct 1206 CAGGGTAAATTA 1195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658183104040280