Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12311 197 2e-45 >seq12311 Length=1845 Score = 197 bits (218), Expect = 2e-45 Identities = 344/495 (69%), Gaps = 4/495 (1%) Strand=Plus/Plus Query 48345 CCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAAC 48404 ||||||| ||||| || ||||| | || ||| || ||||| ||| ||||||| | | Sbjct 18 CCTGGTCTCTTATTTCCCGACTGATCAACATGTCTTGCTGTATTATTAAAAACTCTAAGC 77 Query 48405 ATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTT 48464 ||||| || | ||||||||| |||||||| ||||| | ||||| |||| |||| | Sbjct 78 ATTGGTACCAGACCATTTGAAATACCATTAGTTCCAGCTATATATGTTCCCTTAGCACGA 137 Query 48465 ATATTACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT 48523 | | | ||| | ||| || ||||| || || ||| || |||| |||||| | | Sbjct 138 ACACAATGAATATTTAAT-CCAATACCTCCAGCTGATTTTGAGATTAAAGCACATTTTGT 196 Query 48524 AAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA 48583 || || |||||||||||| |||||||| || ||| |||| || ||||| ||| Sbjct 197 TAGAGTTGAATAAATTCCTTCGATACTATCCTCAGACATTGTTAAAAGGAAACATGAAGA 256 Query 48584 CATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643 |||||| |||||| ||| | | |||| || || || |||||| | || || | Sbjct 257 CATTTGTGGATGAGGTGTTGCAGCCGAGAATAGAGTCGGTGAAGCATGAGTGAAATATCT 316 Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA-TCCCATTGATGTATACCTA 48702 ||| ||||| || ||||| |||| || | || ||| | || | || || || | Sbjct 317 CTCCGATAATAAATTATAAGTTTTGATTGCTTCTTCGATATTTTCACCG-TGAATTCCAA 375 Query 48703 TAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAA 48762 || ||| | ||| | ||||| ||| || | ||||||||||| | || ||||| || | Sbjct 376 CAGCTACTCTCATCAGCATATGTTGGGGACGTTCAACAATTTGTTCGTTAATTTTTAAGA 435 Query 48763 GATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAA 48822 |||| || ||||| ||| ||||||||||| || ||||| ||| || ||| | | Sbjct 436 GATAGGAACGTTCCATTGTCTTAAAACCAAAGTAATTGTAGTCAAAATCACGATCGTAAT 495 Query 48823 TAATTGATGAATTTA 48837 | |||||| ||||| Sbjct 496 TTATTGATTTATTTA 510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561920894054520