Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq24992 176 6e-39 >seq24992 Length=2139 Score = 176 bits (194), Expect = 6e-39 Identities = 370/544 (68%), Gaps = 27/544 (5%) Strand=Plus/Plus Query 47544 CATGTCCTCAACCAATTGTTTAAAAGAAGTTTTAGGTTCCCAACCCAATTTTTTCTTTGC 47603 ||| ||||| || |||| | |||||||| ||| || ||||| | ||| ||| || || Sbjct 657 CATATCCTCCACTAATTCTGTAAAAGAAACTTTGGGAACCCAATCTAATACTTTTTTAGC 716 Query 47604 CTTAGAGGCATCACCTAATAAGGTCTCTACTTCAGCAGGACGGAAATATTTAG-AGTCAA 47662 ||| |||||||||||||| || ||||| | ||| || |||||||| | | | | Sbjct 717 TTTACTTGCATCACCTAATAACAAGTCAACTTCTGTAGGGCGAAAATATTTTGGATTGAC 776 Query 47663 TTCTGATAACCGTTTTACCATCAGAA------TCAATACCAACTTCATCAAGACCAGAAC 47716 || | || | | ||||||| |||| |||| ||||| | ||||| Sbjct 777 TTTT----ACTCTAACAATATCAGAACCCTTTTCAACTCCAATTTCATGCATTCCAGAGT 832 Query 47717 CTTCCCATCTAATATTCA-----TATCAAAATAAGGTGCAGATTCCTCAACAAACTGACG 47771 || |||| ||| |||| ||| || ||| ||||| |||| ||| | || Sbjct 833 TTTTCCATTCAAT-TTCACGACCTATGAATTTAAA-TGCAGCTTCCACAA-ATTCTTTAA 889 Query 47772 GACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCAT 47831 || | || || || || ||||| ||||| || | ||||| ||||||||||||||| Sbjct 890 CACTGTGAGTT--TTACCAGTTGCAATTACAAAGTCTTGAGGTTTTTCTTGTTGAAGCAT 947 Query 47832 TAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATT 47891 | ||||||||| || |||||||| |||||||||||||||| | | ||| | ||| Sbjct 948 CATCCACATAGCTTCAACATAATCCTTGGCATGTCCCCAGTCTCTTTTAGAATCTAAATT 1007 Query 47892 TCCTAGATATAAACAGTC---TTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAAT 47948 || | | ||||| || ||| || | | | ||| | | || ||||||||| Sbjct 1008 ACCCAATTCAAAACATTCAAGTTGATTCCAATGA---ATTTTTGCCACTGATCTTGTAAT 1064 Query 47949 CTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACT 48008 || | |||||| || ||||||| | ||| || ||||||||||| || | ||| ||| | Sbjct 1065 TTTTCTAGTTACGAAGTTTTCACCTCTTCTAGGTGATTCATGATTGAATAAAATTCCATT 1124 Query 48009 ACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTT 48068 ||||| | |||| || | ||| | |||||| |||| ||||| || || || ||||| Sbjct 1125 ACAGGAAAACATGTTATAAGCTTCTCTATAGTTAATTACAATCCAATATCCGTACAGTTT 1184 Query 48069 TGCA 48072 ||| Sbjct 1185 AGCA 1188 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 48433 ATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGT 48492 || |||||||| | ||| |||||||| | |||| ||| ||||| || ||||||||||| Sbjct 1702 ATTCCATGAACTTGATATCCCTTTTCTAAGAGAAATTCGGCTAAATAGGAACCATCTTGA 1761 Query 48493 CCTGTAATACCAGTGATTAAAGCAA 48517 || || || |||||||||||||||| Sbjct 1762 CCAGTTATTCCAGTGATTAAAGCAA 1786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665271933540760