Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq24992 87.8 2e-12 >seq24992 Length=2139 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 177618 TTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCT 177677 ||||||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 933 TTCTTGTTGAAGCATCATCCACATAGCTTCAACATAATCCTTGGCATGTCCCCAGTCTCT 992 Query 177678 GGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAAT--TTGTTTG 177735 || | | ||||| | ||||| | || | | ||| |||| | |||| Sbjct 993 TTTAGAATCTAAATTACCCAATTCAAAACATTCAAGTTGA---TTC-CAATGAATTTTTG 1048 Query 177736 ACGC-CATC-AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGT 177793 | | ||| ||||| || | || || |||| |||||| ||| |||||||| || | Sbjct 1049 CCACTGATCTTGTAATTTTTCTAGTTACGAAGTTTTCACCTCTTCTAGGTGATTCATGAT 1108 Query 177794 TGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTC 177835 |||| | ||||| |||| | |||| ||| | ||||| Sbjct 1109 TGAATAAAATTCCATTACAGGAAAACATGTTATAAGCTTCTC 1150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596370174239840