Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq25900 100 8e-16 >seq25900 Length=2493 Score = 100 bits (110), Expect = 8e-16 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 233259 TTAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCA 233318 |||||||| || ||| || || | ||| ||||||||||||||||||||||| ||| | Sbjct 728 TTAAAAATTGTGCAGCTCCATGGGAAATTTGACAATCACGTTCCATTTCACCAAAACGTA 787 Query 233319 GACCACCATCATTTGACCTACCCTGGACTGTTTGAC-GAGTTAAAACAGTTCTTGGACCC 233377 |||||||||| || | ||||| | | ||| | || ||| | || | ||||| Sbjct 788 AACCACCATCACGTGCACGACCCTCCATAGGTTGTCTGACCAAAATCTGTAC-AGGACCA 846 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGA 233437 | || | ||| ||||||||| | ||||||||||| || | | |||||| ||| Sbjct 847 CGTGCTCTCGAATGAATTTTATCATCGACCATATGCTTGAGACGCTGATAATATGTTGGA 906 Query 233438 CCAATAAATAGTTCTGCGTGTAATTGTTC-CCCAGATTCACCGCTGTATAAAACTTCATT 233496 |||| ||||| || || | ||||| | | || | | || |||| | ||||||||| Sbjct 907 CCAAGAAATACTTGAGCAT-TAATTTTACGACCGGTGTGTCCATTGTACATAACTTCATT 965 Query 233497 ACC 233499 ||| Sbjct 966 ACC 968 Score = 86.0 bits (94), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 252532 TCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTC 252591 ||||| | | || | ||||||| | ||| | || | || || |||||||||||||| Sbjct 2015 TCCATTCGAACATGAAAATTTGTTATATAAACTCCCATAGCTTGTTTTCCCATAGCACTT 2074 Query 252592 TGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAACA 252651 || || |||||||| ||||| ||||||| || || || || || |||||| |||| Sbjct 2075 TGATAGGTATTTCTAGGAGATTGATTGTGATCAGGAAATGGTATAATTGATGCACAAACA 2134 Query 252652 CCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683 || || || | ||| ||||||||||| || Sbjct 2135 CCTAAAATCATAGCTGGATGAATTTCACAATG 2166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471313289518391