Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19619 170 2e-37 >seq19619 Length=2748 Score = 170 bits (188), Expect = 2e-37 Identities = 256/364 (70%), Gaps = 0/364 (0%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 || |||||||| |||||||| || || ||| |||| | | |||||| | | || | Sbjct 1961 CCATGATAACCACATGCTTTACAACCTTGAGAGATTGTTTGTTTTTTAACAGCAACAAGT 1902 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 | ||||| || || || |||||||| ||||| || ||| |||| || ||||||||||| Sbjct 1901 AATTCAGTTTCTGGATTATCACATTCTGGACATAAAACATACTTTCGAATGAAACCATCC 1842 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | || || ||||| || | || || || || || || || || ||||| || || Sbjct 1841 AAAAGATCTTGTAATTTTGATGCATCATGTGAACCATTTACAATAAAACGTTCATTCTTA 1782 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 ||||| | || ||||| || |||| || || || || || ||||| || ||| | || Sbjct 1781 TAATCAAATTGAGTTTGTGCACCCAATTCACAACCAAAATATTTTGTTGGATAAGTTGCT 1722 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 |||||||||| || || || | ||| ||| || || || || || || || || || Sbjct 1721 GGACGTCCAATTGCTTTTGCAACTTCAATCATATTAACAATAACGGTTTTAATACCATTA 1662 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || || ||||| || |||||| || | |||||||| || || || || || || || Sbjct 1661 CCTTTACCTTCAACTTTGGCGTTAATTCTTGGCATTTTATAACGATAAAATGCATCGGCA 1602 Query 34615 ACAT 34618 |||| Sbjct 1601 ACAT 1598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412707042408299