Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq25900 87.8 2e-12 seq23987 87.8 2e-12 seq17792 82.4 1e-10 >seq25900 Length=2493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 193433 TCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAA 193491 ||||| ||||| ||| |||| || ||||||||| |||| | |||| | ||||||||| Sbjct 1389 TCAGT-ACGTACACCACAAATTGGTGATAAATTTGCTTCACGCCATGGAC-AAAAAGGAA 1332 Query 193492 CTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAG 193551 | || || || || || || || ||||||||||||||| | ||| | ||| | Sbjct 1331 CATGCGGAATTATGTACCGTCAGGAGGATATGCCATTTACATGTGAAGGACTAACACCCG 1272 Query 193552 ATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 ||||||| |||||||| || |||||||| | ||||| ||| ||| | |||| Sbjct 1271 ATATTATAATTAATCCGCATGCCATTCCATCACGTATGACAATTGGTCATTTAATTG 1215 >seq23987 Length=1200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 51886 TATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTC 51945 |||| ||| | || ||||||||||||||| || ||| | | |||||| || Sbjct 453 TATTCAATCGTCAGCCAACACTTCATAAAATGTCAATGATGGGACACTACGTTAAAGTTT 512 Query 51946 AACCAGTAAAAACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTG 52005 ||| ||||||| ||||||||| | || | | || ||||||||||||| Sbjct 513 TGCCATGGTCAACATTTCGTATGAATTTGAGTTGTACCTCACCGTACAATGCTGATTTTG 572 Query 52006 ATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAA 52058 | || ||||||||||||||||||||||| |||||| || | || ||||||| Sbjct 573 ACGGAGATGAAATGAATTTACATGTTCCACAATCACTTGAAACTCGTGCTGAA 625 >seq17792 Length=2801 Score = 82.4 bits (90), Expect = 1e-10 Identities = 125/177 (71%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 51870 GATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGT 51929 || |||||| || |||| ||| | |||||||| || |||||| |||| || Sbjct 1527 GACGGTGATTTAGTTGTATTTAATCGTCAACCAACTCTGCATAAAATGAGTATGATGGGT 1468 Query 51930 TTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGGCTATGACTAAAGCA 51989 || ||||||| || ||| ||||||| |||||||| | || | | Sbjct 1467 CATAGAGTTAAAGTTTTACCCTGGTCAACATTTCGTATGAATTTAAGTTGTACATCACCG 1408 Query 51990 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGA 52046 || ||||||||||||||||| |||||||||||||||||||| || || || |||||| Sbjct 1407 TACAATGCTGATTTTGATGGAGATGAAATGAATTTACATGTACCACAGTC-TATGGA 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634965268068040