Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq25900 96.9 5e-15 >seq25900 Length=2493 Score = 96.9 bits (106), Expect = 5e-15 Identities = 187/270 (69%), Gaps = 16/270 (6%) Strand=Plus/Minus Query 201897 ACCGGAAGAAAAATTCAAAGTAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAA 201956 ||||| | |||||| | | || | ||| | || |||||||| ||||| ||||| || Sbjct 941 ACCGGTCGTAAAATTAATGCTCAAGTATTTCTTGGTCCAACATATTATCAGCGTCTCAAG 882 Query 201957 CATATGGTTAAGGATAAAATGCATGCGAGAAGTCATGGTCAAGTAACAACATTACATCGT 202016 |||||||| | |||||||| ||| ||||| | ||||| ||| | ||| | || Sbjct 881 CATATGGTCGATGATAAAATTCATTCGAGAGCACGTGGTCCTGTAC--AGATTT--TGGT 826 Query 202017 CAACCAAACTGTGGTCGGTCC----CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAA 202072 || ||| || ||| |||| | | |||||| ||| | ||||| ||||||||| Sbjct 825 CAGACAACCTATGGAGGGTCGTGCACGTGATGGTGGTTTACGTTTTGGTGAAATGGAACG 766 Query 202073 AGATTGT--ATTTTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAATGTTTTTGTA- 202129 |||||| | ||| ||||| || |||||||||||| ||| | | |||||| | Sbjct 765 TGATTGTCAAATTTCC--CATGGAGCTGCACAATTTTTAAGAGAACG--TCTTTTTGAAG 710 Query 202130 -TTCAGATCCTTTTCAAATCGATGTGTGTA 202158 ||| ||||||| | ||| |||| |||| Sbjct 709 TTTCTGATCCTTATAGAATACATGTTTGTA 680 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 201560 TCAGATACGTATACCAGAAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAA 201618 |||| |||||| |||| ||||||| ||||||||| ||| | |||| | ||||||||| Sbjct 1389 TCAG-TACGTACACCACAAATTGGTGATAAATTTGCTTCACGCCATGGAC-AAAAAGGAA 1332 Query 201619 CTTGTGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGG 201678 | || || || || || || || |||||||| |||||| || | || || | Sbjct 1331 CATGCGGAATTATGTACCGTCAGGAGGATATGCCATTTACATGTGAAGGACTAACACCCG 1272 Query 201679 ATATTATAATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTGCAA 201738 |||||||||| ||||| || || |||||| | ||||| || ||| |||||| | Sbjct 1271 ATATTATAATTAATCCGCATGCCATTCCATCACGTATGACAATTGGTCATTTAATTGAAT 1212 Query 201739 CTGTTATGGGTAAATTA 201755 | || |||||||||| Sbjct 1211 GTCTTCAGGGTAAATTA 1195 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 201146 TGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGT 201205 |||||||||| ||||||| |||||| |||||||||||| || |||||||||||| || Sbjct 1840 TGGTATTAATTCAATTGTTGCAATTTTATGTTACACTGGTTATAATCAAGAAGATTCAGT 1781 Query 201206 TATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 |||| | ||| | || || ||||| | ||||| || Sbjct 1780 TATTTTAAATTCATCAGCTGTTGAACGTGGTTTCTT 1745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655060948087000